Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01500 ATGGTGGCGGCATACGAGGAGAGTCGCCGCAAAAGGTTGGAGGAGAACCAAAAGAGGATGGCGGCCCTCAATCTGCACCAGCTTTCTCAAGCCCTTCACAAATCCTCTTCTCCCAAATCCAAACCCTCTCCGTTTGTTAATTTGCAGGTCAAACCTCGAACCATCCAGAAAGAGCTTGTTGTGGTGAGGAGGTCCGGCCGTGTCGCCAACATGCCTTCTCCTGTTTACAAAGAAGTGCTTATTGATCGCGTTTCAATACCTAGAGCTAGAAGGGTTTGTAGTGGTTATAATAAGTATAGGGATTATTCGAATCGGGTATATGCTTCAGATGAAGCCAGAGAGGAAGCATTAGAGAAAGCTGAAAAGTTACAATCGGATTTGGAATCTGAATATCCAACCTTTATAAAGTCAATGCTCCAGTCCCATGTCAGTGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGGAAAACCTTCCAAAACAGGACGAAGTGATTACTTTGGTCGATGAGGAAGGGAATGAGTATAAAACGATATATCTGCCTCGAAAAACAGGACTCAGTGGTGGATGGAAAGGATTTGCGGTTGCTCATAACCTAGCTGACGGGGACGCTTTAATTTTTCAATTAATTAAACGCACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCTCCAGAGGCAGAGGGTAAACAGCTAAAGTGA 711 0.4529 MVAAYEESRRKRLEENQKRMAALNLHQLSQALHKSSSPKSKPSPFVNLQVKPRTIQKELVVVRRSGRVANMPSPVYKEVLIDRVSIPRARRVCSGYNKYRDYSNRVYASDEAREEALEKAEKLQSDLESEYPTFIKSMLQSHVSGGFWLGLPVHFCKENLPKQDEVITLVDEEGNEYKTIYLPRKTGLSGGWKGFAVAHNLADGDALIFQLIKRTAFKVYIIRANSPPEAEGKQLK. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01500 236 SMART B3_2 134 225 IPR003340 GO:0003677
Seca4g01500 236 Gene3D - 108 226 IPR015300 -
Seca4g01500 236 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Seca4g01500 236 Pfam B3 DNA binding domain 134 224 IPR003340 GO:0003677
Seca4g01500 236 SUPERFAMILY DNA-binding pseudobarrel domain 128 225 IPR015300 -
Seca4g01500 236 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 226 IPR044837 -
Seca4g01500 236 CDD B3_DNA 132 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01500 Seca-Chr4 24217209 24223350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01500 52 230 B3 DNA Binding Superfamily AT5G42700 62.222 4.41e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g01500 B3 7.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01500 - - gmx:100797091 343.584