Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01489 ATGGCTGATCAGAATCGCTTTTCATCGGAAGAAAATAAAAGCTTTGTAGATGATAAACTTCAAAGGGGAGATGAAATATGGCCATCACTTGTTGAAGCAATTGAGGGATCATTCATTTCCTTGATCATATTCTCACAAGACTATGCTTCTTCACATTGGTGTTTGGAAGAAGTTGTGAAAATACTTTACTGCAGAGACAAGCACCAACAGATCGTAATACCTGTTTTCTACTGTGTAGATCCCACATGTGTACGGCATCAAACGGGGACTTATGAAAATTCATTTGCTAAGCATGGAAAAAAACATAATTCCACCAAGATACAAATTTGGAGAGATGCTTTGAACAAATCTTCTAATCTAGCAGGAATTAAGTCATCTGATTTTCAAAATGATGCTAAGCCGGTTGAAGAAGTCGTCAATCTTTTGTTGAAGAGATTGTGTAAATACCCAGTTAACTCAAAAGGACTTATTCGCTCAAAAAGATTTATTGGGATTGACAGACAAATGGCAGATGTAGAATGGTTGTTACGTCAAGAATCAGAACACCCTAGTGTTATTGGAATTTGGGGGATGGGCGGTATCGGCAAGACAACCATTGCAAGTGAAGTATATAACAAACTACGGTCTGAATATAATGGTTGCTGTTTTTTGGAAAATGTAAGAGAAGAATCATCAAGACATGGAATTAAATCTTTGAAAGAAAAGCTCTTTTCTAACTTATTAGGAGAAGCTGTGAAAATTGACACAACAAATGGGTTGTCCAATGATATTGTGAGAAGGATTGGTGGTATGAAAGTTCTTATTGTTCTTGATGATGTAAATGATTCAGATCACATAGAAAACTTATTATTTGAAGCTCTTGATTGGCTTGGATCAGATAGTAGAATAATTGTAACAACTGGAGATAAGCAAGTGCTTACTGCTGGCAAAGCGGATGATATACACAAGGTTGAAGAGTTGAATTCCAGTGAAGCACTTAAGCTTTTCAATTTGAATGCCTTTAACCAAAGTCATTTGGAAACAGAGTATTATGAGCTATCAAAGAGGGTGGTTGATTATGCCAGTGGCATTCCATTGGTTCTTAAAGTTTTGGGACGTCTTCTTCACGGAAAAGATAAGGAAGTATGGGAAAGTCAATTAAATAAGATTGAAAAAATGCTAAACAAAAAAGTTTACGATGTAATGAGACTGAGTTATGATGATTTAGATCGCAAAGAGAAAAAATGTTTTTTAGATCTTGCATGTTTCTTCATTGGAATGATTGGGGAATTGAAAGTGGATGACATAAAAACTTTATTGAGAGATGGTGAAAGTGATAATTCAGTGACGATTGTGTTTGAAAGGTTGAAAGATAAAGCTCTTGTAACTTTTTCTAAGGATAATGGGCTTCAATCTTTGTCATCTGAACTAAGATATCTTCGTTGGAATAATTGCCCTCTAGCAACCTTGCCACAGAATTTTTCTGCCGAAAAACTTGTTATATTGAACTTGTCATCTAGCAAGATAATAAAACTTTGGGACGGAGTGCAGAATCTCGTGAATTTAAAACTAGTTTCACTCATTCGTTTCCGTAACCTGTCAGAGCTGCCAGACTTTTCCAAAGCCACAAATCTTGAAGTACTATTAGCCTCATTTTGTGATGACTTGTCAGGGGTGCATTCATCTATTTTCCCTCTCAAAAAGCTCAATACATTGGATCTTCGCTACTGCACTAATATTGTCAAACTTACCAGTGATACCCATTTGAACTCCCTCAGTTATCTCCAACTTGATTGCTGTTTTAGTCTGTGGAAATTCTCAGTGACATCAGAGAATATGAAAGAATTGTATTTAGCAAACACGATCATCCGAGCATTGCCCTCATCATTTGAACATCAAAATCAAAGCAAACTTGAAATCCTATCTCTAAGAAGAAGTGACATTGAGGAGTTACCTTCATGCATGAAGAAACTTACAAGATTGCAATGTCTAGACATAAGGGATTGCTTGAGGCTTCGAACAATACCAGAGCTTCCCCCCTCTCTTGCAACTCTCCTTGCTGGAGACAGATATGGACAACTGGAGGCTGTATGCTTCCCTACGGTTGCTGAGCAATTCAAGGAAAATAGGAAAAGGGTTGAGTTCTGGAATCACTTGAGTTTGGATGAAGACTCTCTCATAGCTATTGAGTTGAATGCGCGAATCAACGTGGAAAAATTTGCACACCAACATTTATCTGCACCAAAACATGATTATGTTGAAAGTTATGATATTCAATATGATTATGATGATTCTTATCAAGCTGTGTATGTGTATCCAGGAAGCAGTGTTCCAGAGTGGTTGGAGCATAGAACAATGGAGGATTATATACTTATTGATCTCTCTTCTACTCCACGTTCCCCTCAGTTGGGCTTCATTTTCTGCTTCATCCTTACAGAGCATGGATTATTTGATGATAATAGGCTGCTATTTGAAATCACTATCAGTGATGGTGCATGTGAAGGTAATGAAGAGGGTAGTGCTACAATGTGCATACGTAGACCTTGCGAAATTGTTTCAGATCATGTGTGTTCGATGTACCACCAAATATGTTCTCACTACCTAAATAGCAGAGCCACAAATCTAACAAGATTTAAAATCAAGGTTACAACAACGAAGGGATCTGGTCCGACTTTTGCAAAATTGCATCGGGTGGTGTTAAAAGGATTTGGGGTCAGCCCAATAAATGTTAAAATAGTGTAA 2721 0.3723 MADQNRFSSEENKSFVDDKLQRGDEIWPSLVEAIEGSFISLIIFSQDYASSHWCLEEVVKILYCRDKHQQIVIPVFYCVDPTCVRHQTGTYENSFAKHGKKHNSTKIQIWRDALNKSSNLAGIKSSDFQNDAKPVEEVVNLLLKRLCKYPVNSKGLIRSKRFIGIDRQMADVEWLLRQESEHPSVIGIWGMGGIGKTTIASEVYNKLRSEYNGCCFLENVREESSRHGIKSLKEKLFSNLLGEAVKIDTTNGLSNDIVRRIGGMKVLIVLDDVNDSDHIENLLFEALDWLGSDSRIIVTTGDKQVLTAGKADDIHKVEELNSSEALKLFNLNAFNQSHLETEYYELSKRVVDYASGIPLVLKVLGRLLHGKDKEVWESQLNKIEKMLNKKVYDVMRLSYDDLDRKEKKCFLDLACFFIGMIGELKVDDIKTLLRDGESDNSVTIVFERLKDKALVTFSKDNGLQSLSSELRYLRWNNCPLATLPQNFSAEKLVILNLSSSKIIKLWDGVQNLVNLKLVSLIRFRNLSELPDFSKATNLEVLLASFCDDLSGVHSSIFPLKKLNTLDLRYCTNIVKLTSDTHLNSLSYLQLDCCFSLWKFSVTSENMKELYLANTIIRALPSSFEHQNQSKLEILSLRRSDIEELPSCMKKLTRLQCLDIRDCLRLRTIPELPPSLATLLAGDRYGQLEAVCFPTVAEQFKENRKRVEFWNHLSLDEDSLIAIELNARINVEKFAHQHLSAPKHDYVESYDIQYDYDDSYQAVYVYPGSSVPEWLEHRTMEDYILIDLSSTPRSPQLGFIFCFILTEHGLFDDNRLLFEITISDGACEGNEEGSATMCIRRPCEIVSDHVCSMYHQICSHYLNSRATNLTRFKIKVTTTKGSGPTFAKLHRVVLKGFGVSPINVKIV. 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01489 906 Gene3D - 148 316 IPR027417 -
Seca4g01489 906 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 693 IPR044974 GO:0006952
Seca4g01489 906 Pfam Leucine Rich Repeat 491 510 IPR011713 -
Seca4g01489 906 Gene3D - 319 403 IPR042197 -
Seca4g01489 906 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 122 IPR035897 -
Seca4g01489 906 Gene3D Ribonuclease Inhibitor 433 598 IPR032675 -
Seca4g01489 906 Gene3D - 4 147 IPR035897 -
Seca4g01489 906 Gene3D Ribonuclease Inhibitor 599 687 IPR032675 -
Seca4g01489 906 ProSiteProfiles TIR domain profile. 1 146 IPR000157 GO:0007165
Seca4g01489 906 SMART till_3 7 120 IPR000157 GO:0007165
Seca4g01489 906 SUPERFAMILY L domain-like 462 679 - -
Seca4g01489 906 Pfam TIR domain 13 146 IPR000157 GO:0007165
Seca4g01489 906 Pfam NB-ARC domain 173 399 IPR002182 GO:0043531
Seca4g01489 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 413 IPR027417 -
Seca4g01489 906 PRINTS Disease resistance protein signature 185 200 - -
Seca4g01489 906 PRINTS Disease resistance protein signature 260 274 - -
Seca4g01489 906 PRINTS Disease resistance protein signature 354 368 - -
Seca4g01489 906 PRINTS Disease resistance protein signature 557 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01489 Seca-Chr4 24084499 24088760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01489 163 710 WRKY Transcription Factor Family AT5G45050 28.465 1.36e-43 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01489 - - gmx:100796110 776.548