Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01474 ATGGACTCTATTGAGCAGTTAAAGTCATCATCAGAGGATCAAATGGACATCATGATGATGATGATGCAACTCCCTGAATTTTCTGCACCTAATAACTGTAACGACGGTTTTCCACCGTCGGAAGAGTTCTATGGTAGTGCTGCTAACAATATACGCACTACTACTACTATGCCACTAGCAGATTTAATAGACAATAACTCTCCTATTCCTATGCCTTGGTCCTCATCCACCACCACAATCTCTTTCGAACAAGAACAAACGACGTCGTTGCTGTCGTCAAATTGGAAAGCCACCACCGCGAACGAGTCGTCGGAGAAGCGGAACTCGATGGCGGCGATGAGAGAGATGATATTCAGGATAGCGGCGATGCAGCCAATACACATAGACCCTGAGTCAGTGAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCTCAGAGCGTGGCGGCGCGTCACCGGAGAGAAAGGATAAGTGAGAGAATAAGGATACTGCAGAGATTAGTACCCGGAGGGACTAAGATGGACACTGCTTCCATGTTGGATGAAGCTATTCATTACGTCAAGTTTCTCAAGACACAGGTTCAGTCACTTGAACGAGCCTCTGTCAATAATACTGTAGGGATAGGGTTCCCTGTTGCAATGTCTAGTAGGAGTACTGTTCCCACCCCTAATTATCATCTTCCTTTACCTAAGCCTTATCAACCTCGAAATGTTGAGCATTATGGAGATGCATGA 741 0.4588 MDSIEQLKSSSEDQMDIMMMMMQLPEFSAPNNCNDGFPPSEEFYGSAANNIRTTTTMPLADLIDNNSPIPMPWSSSTTTISFEQEQTTSLLSSNWKATTANESSEKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASVNNTVGIGFPVAMSSRSTVPTPNYHLPLPKPYQPRNVEHYGDA. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01474 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 201 IPR036638 GO:0046983
Seca4g01474 246 CDD bHLH_AtIND_like 144 200 - -
Seca4g01474 246 FunFam BHLH transcription factor 146 209 - -
Seca4g01474 246 Gene3D - 142 208 IPR036638 GO:0046983
Seca4g01474 246 MobiDBLite consensus disorder prediction 225 246 - -
Seca4g01474 246 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 46 226 IPR045843 GO:0003700|GO:0006355
Seca4g01474 246 Pfam Helix-loop-helix DNA-binding domain 152 192 IPR011598 GO:0046983
Seca4g01474 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Seca4g01474 246 SMART finulus 149 198 IPR011598 GO:0046983
Seca4g01474 246 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01474 Seca-Chr4 23918658 23919419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01474 70 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 66.443 4.54e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01474 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01474 - - vum:124831293 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01474 4 23918658 23919419 Seca4g01474 4 23918658 23919419 ECH