Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01473 ATGGCTCTTATGCTAGAGAACTGTGAGGGCATTTTACTGTCATTAGAGTCACACAAAGCAGTTCCAGCACCTTTCCTGACGAAGACATACCAACTAGTAGACGATCCCGCCACAGATCACATAGTCTCTTGGGGAGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGAGACCTTCTCCCTAACTACTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGTTTTAGAAAGATTGTGCCAGATAGATGGGAGTTTGCTAATGAATTCTTCAAGAAAGGAGAGAAGCATTTGCTGTGTGAGATCCATAGAAGGAAAACTGCTCAGCCTCATCAACAACAACCAGACAGAATGAATCATCATCATCCACTTGGAGGATCAGTGAATGTTCCTTCTTTCTTTCCATTCTCAAGCAATAGAGTGAGTATCTCTCCTCCCAATGACTCGGAGGAGCAACTCAATAATTGGTGTGACTCTCCACCACTCACTTCTCCAAGAGTAACAAACTACAACACTTCAGTAACCGCTCTTTCAGAGGACAATGAGAGACTCAGGAGAAGCAACAACATGCTCATGACGGAGCTTGCACACATGAAGAAGCTCTATAATGACATAATCTACTTCGTTCAGAATCATGTCAAACCAGTGGCTCCAAGCAACTCTTACACTCCTTCTTTCCTACTCTGCAATACACCACAACAACCTTCCACTACTAGTAATGTTTCAATGCTGCAACAAAGGCCAATGAACCACCTTCTCGGTTATTATTCATCTACTAACCCTAAGCAATATTCCACAACTCAACCTCATGTTGTGAACTCTCCCAGTCCAACCAACACATCAAGGAGCTCTATAACGGTTGTGGAAGGTCCTAACAGTAACAGCTGCAAGACTAAGCTTTTTGGGGTATCTCTTCAGTCTAAGAAAAGAGTGCGCCCTGAATATGGATCTAATAATCCAATTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAAGATGACTTGGGTTTGAATCTCATGCCTCCTTCCACTTGTTAG 1071 0.4379 MALMLENCEGILLSLESHKAVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPHQQQPDRMNHHHPLGGSVNVPSFFPFSSNRVSISPPNDSEEQLNNWCDSPPLTSPRVTNYNTSVTALSEDNERLRRSNNMLMTELAHMKKLYNDIIYFVQNHVKPVAPSNSYTPSFLLCNTPQQPSTTSNVSMLQQRPMNHLLGYYSSTNPKQYSTTQPHVVNSPSPTNTSRSSITVVEGPNSNSCKTKLFGVSLQSKKRVRPEYGSNNPINSETNKARLVLEKDDLGLNLMPPSTC. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01473 356 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01473 356 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01473 356 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01473 356 Gene3D - 17 116 IPR036388 -
Seca4g01473 356 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01473 356 FunFam Heat stress transcription factor B-4 17 115 - -
Seca4g01473 356 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01473 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 273 IPR027725 -
Seca4g01473 356 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01473 356 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Seca4g01473 356 MobiDBLite consensus disorder prediction 272 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01473 Seca-Chr4 23880842 23882497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01473 1 355 HSF AT1G46264 58.839 4.34e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca4g01473 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01473 K09419 - gmx:100781389 563.148