Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01469 ATGCAAAGGCAGGGAGGTACAATTGGTTCCATGTCTGAAGCCTTAGAATTTGATTGTGGATCTACATCAAGTAATGCTACTGCAGATCAGCAGATTTGCTGGAATAATGTGCGGAATCCTGCAGAAAATCAAATACCTGATTATATACTCTCTCCTAGTGATATAAACCCATCTTATGTGAATTCAATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGGGCCAAGTTCCAGTAATGCGCCAAATGAACTTGACAATAACGAGCAGAAAAGAGAGCTTGGATGGTCATCATCCATAAGTGCTGGTGCATTAGCTGGTCCAAGGGTAGAAGACAGGCGCCTTGAACCAAACAATCCTCTTTCACTGAACAATGTCAATACTGGTCCTGTGTATATGCGCAGCTCCAATTCTCATTTAATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCAGACAGTGGCAGTGATGATAGTCAACATCTGGAGCACCCTAACTTACACAGATCTAGTGAATCAGTAAATGAGTGTAGTCCACCTAATATTGGTTCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGGTTTTCTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCTGGACACTCGACGTGTGTCTTGTAAAAGAAAAGCTGTTGAAGTAAATACTGGTCAATCTTCAGATGGTGGCAATTCTAGCTACAGTCAGCATACAGATGGTAGTGGTTGGCACACCATTCCTACTCAGGATAATGCTGGGAGCAGTTCAAGCAGGTCTATTTCGTCAGAGCAGTTAAATGCAAGGCTTGGCCTGGCTATGGGGGATGAAGCCTCTGAAAGTGTTCCTGGTTCAGACATTGGAGGAAGCTCAGAAAGCTTCCACAGGAATTTACGTTTGAGGATAAATCCTTCAAACCAACAAAATTCCAATCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATCCTGGTGTTCCTTCTTCCTCTCAAGTGTCACAAAGGTTTCATCCGGTTGATAATTCTCTGTACTTGAGGTCAGCTCCGGTGATAGATAATATAATTCCTCAAAGTCAGCCACTTGTAGTCCATGTGCCTGCTTTGCCAAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCAAGAAACATGCATTCATCAAACTCAATTATATGTGCAGACAGGGATAATCTACCACAGGAGGATGCAAACTCAAGAAGTGTGTCTAGAAATATTTTAGAACACCCAGTATTTGTACCTCCAACTGATTTAAGAAATTTGGTTCAAAATCCAACATTTAGAGCTTCAAGTTCAAGTAGTGCAAATTTAAGCATTCCAGGAAATGTTGCTTCTTCATCAAGGACTGGATCAAATTCAGCTACCAATCCCTCATCTGCCTCAACCTGGGTCTCTCGTCCTAATCCTCCTCAGCATCCCCGGAGGTTATCTGAATATGTCCGTCGCTCCTTGTTTTCTCCTGGTTCTGATGCTACTGGAGGTCCAAGCAACAACTATTCTTCCTTGCGCTCCGGTCCTTCTACATCTGAATTGAGGGCGTTATCATCAGGGGCTCACTCAAGATCATCTTCATGGGTTGAGAGGCAAGGAGATAGTGACTTTGGAATTCCCTATTCATTACGTACTTTAGCTGTTGCGAGTGAAGGCAATGGTAGACTTCTATCTGAGCTCCGCAATGTATTGGGCCTTATGCGTAGAGGTGGGAACCTTCGATTTGAGGATGTTATGATCCTTGATCAATCAGTGATTTCTGGAATGGCTGATATTCATGATCGACACCGGGATATGAGACTTGATGTTGATAACATGTCGTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTCAGTACTGGATTGAGTGAGGAAACAATATTGAAACTTTTGAAACTGAAGAAGTACTCAATTGAAACAGGATCTCAGCTTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTACAGTGATGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAACTGTATTAAACAGTGGTTAATGCATAAGAATCTGTGTCCCATTTGTAAAACAACGGGCTTGTCAACATGA 2127 0.4264 MQRQGGTIGSMSEALEFDCGSTSSNATADQQICWNNVRNPAENQIPDYILSPSDINPSYVNSINHEWQNLSGWSLGGPSSSNAPNELDNNEQKRELGWSSSISAGALAGPRVEDRRLEPNNPLSLNNVNTGPVYMRSSNSHLMSQNLNLNAGLADSGSDDSQHLEHPNLHRSSESVNECSPPNIGSGSFLLPSGNNGFLVEDTDGRPGCSLDTRRVSCKRKAVEVNTGQSSDGGNSSYSQHTDGSGWHTIPTQDNAGSSSSRSISSEQLNARLGLAMGDEASESVPGSDIGGSSESFHRNLRLRINPSNQQNSNPPTAFSTGSMIRHPGVPSSSQVSQRFHPVDNSLYLRSAPVIDNIIPQSQPLVVHVPALPRNRQSFRWSGGSSSRNMHSSNSIICADRDNLPQEDANSRSVSRNILEHPVFVPPTDLRNLVQNPTFRASSSSSANLSIPGNVASSSRTGSNSATNPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSDATGGPSNNYSSLRSGPSTSELRALSSGAHSRSSSWVERQGDSDFGIPYSLRTLAVASEGNGRLLSELRNVLGLMRRGGNLRFEDVMILDQSVISGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKLKKYSIETGSQLDAEPCCVCQEDYSDGDDIGTLDCGHDFHSNCIKQWLMHKNLCPICKTTGLST. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01469 708 MobiDBLite consensus disorder prediction 501 540 - -
Seca4g01469 708 Pfam Ring finger domain 661 702 IPR001841 -
Seca4g01469 708 MobiDBLite consensus disorder prediction 223 265 - -
Seca4g01469 708 MobiDBLite consensus disorder prediction 220 265 - -
Seca4g01469 708 MobiDBLite consensus disorder prediction 440 540 - -
Seca4g01469 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Seca4g01469 708 SMART ring_2 661 701 IPR001841 -
Seca4g01469 708 MobiDBLite consensus disorder prediction 173 190 - -
Seca4g01469 708 MobiDBLite consensus disorder prediction 440 480 - -
Seca4g01469 708 MobiDBLite consensus disorder prediction 76 132 - -
Seca4g01469 708 FunFam E3 ubiquitin-protein ligase MBR2 629 706 - -
Seca4g01469 708 SUPERFAMILY RING/U-box 648 704 - -
Seca4g01469 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 707 IPR045191 GO:0061630
Seca4g01469 708 MobiDBLite consensus disorder prediction 380 400 - -
Seca4g01469 708 MobiDBLite consensus disorder prediction 305 338 - -
Seca4g01469 708 MobiDBLite consensus disorder prediction 380 415 - -
Seca4g01469 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Seca4g01469 708 MobiDBLite consensus disorder prediction 150 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01469 Seca-Chr4 23789414 23796361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01469 35 708 C3H Transcription Factor Family AT2G15530 34.174 5.95e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01469 - - gmx:100783014 1107.05