Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01467 ATGATGAGTTTCCCTTCTGTTCGTCGCGTTTCGGAATGTTTTATCAAGCCGCTGCACCCAACTGAAGAGTCAAACAATATCTGCTATTTAACCCCTTGGGATATTGCTATGTTGTCTATGCACTACATCCAGAAGGGCCTCCTTTTCAAAAAGCCCTCATCACTTGTTAACCAACAAGATTTCATCGATAATCTGTTGGAGAAGCTCAAGCACTCCCTTTCTCTTGCTCTTTTTCATTTCTACCCCTTGGCTGGCCGCCTTGTCACTGAAAAAACCCAAGACCCTCCCTCTTATTCTATCTTCGTTGATTGCAAAAACAGTTCTGGTGCTAAATTTATCTATGCAACTTTGGACATCAATATATCCGACATCCTCTCCCCCGTTGATGTTCCACCCATTGTTGACTCATTGTTTGATCTCGACAGAGCAGTCAACCATGACGGTCATACCATGCCTTTGCTATCCATCCAAGTCACTGAACTTGTGGACGGTGTTTGCGTAGGTTGTTCCATGAACCATAGCATTGGTGATGGGACTTCTTTTTGGAATTTCTTTAATACATGGTCTCACATCTTTCAAGCTCAATGGCAAGGGCAAGGGCATGATCATGAGGTTCCCATTTCACGCAGACCCATTCACAATCGCTGGTTTCCAGAGGGCTGTGATCCACTAATCAATCTTCCCTTCAAACATCATGATGAGTTTATTAGCAGATTCGAATCACCCAAACTGAGGGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCAAAGCTGAAAGCAAAGGCCAACTTGGAGTCTAACACAACCAAAATCACTTCATTCCAATCCTTATCAGCACATGTTTGGAGATCCATAACTTGCGCGCGGGGTCTAACATATGATCAGGTAACCAGTTGCAAGTTAACCATAAACCATCGACCGAAAATGGAACCTCCTCTGCCGAAAGAGTACTTTGGAAACTCAATTGGTATGGTGAGTGCAGAGGCGAGGGCAGGGGAATTGCTTGAGAAGGATCTGGGTTGGGCAGCATGGAAGTTGCATCTGGCTGTTGCAAACCGTAACGATGAAGAGGTGCGACAGTTACTCAAAGAATGGTTACAATCTCCTGTTGTATTCCAGCTTGGTCACCACTTTGAAGCCAACAGTGTGACGATGTCAAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGTTGTAGCGGTTTTGAGTGGCTATGCCAATAAATTTGATGGCAACGTGACAGGATATGAAGGATATGGAGGAGGGGGAAGCATAGATTTGGCTGTGTCCCTTTCGCCTGATGCAATGAGAGCGCTGGAATCAAACGAGGAGTTCATAGAGGCAGTTTCTGTGTCCAATCCCTTTTACTAG 1389 0.4478 MMSFPSVRRVSECFIKPLHPTEESNNICYLTPWDIAMLSMHYIQKGLLFKKPSSLVNQQDFIDNLLEKLKHSLSLALFHFYPLAGRLVTEKTQDPPSYSIFVDCKNSSGAKFIYATLDINISDILSPVDVPPIVDSLFDLDRAVNHDGHTMPLLSIQVTELVDGVCVGCSMNHSIGDGTSFWNFFNTWSHIFQAQWQGQGHDHEVPISRRPIHNRWFPEGCDPLINLPFKHHDEFISRFESPKLRERIFHFSAESIAKLKAKANLESNTTKITSFQSLSAHVWRSITCARGLTYDQVTSCKLTINHRPKMEPPLPKEYFGNSIGMVSAEARAGELLEKDLGWAAWKLHLAVANRNDEEVRQLLKEWLQSPVVFQLGHHFEANSVTMSSSPRFNMYGNEFGMGKVVAVLSGYANKFDGNVTGYEGYGGGGSIDLAVSLSPDAMRALESNEEFIEAVSVSNPFY. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01467 462 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 452 - -
Seca4g01467 462 Gene3D - 9 228 IPR023213 -
Seca4g01467 462 Gene3D - 232 448 IPR023213 -
Seca4g01467 462 FunFam Tryptamine hydroxycinnamoyl transferase 230 448 - -
Seca4g01467 462 Pfam Transferase family 11 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01467 Seca-Chr4 23758442 23759830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01467 49 446 Monolignol Biosynthesis Gene Families AT5G48930 29.639 1.18e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01467 - - lja:Lj1g3v1664450.1 706.827