Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01461 ATGAGTTCCCCTGCCGTTCTTCGCGTTTCAGAATGCTTCATCAAGCCGCAGCACCCCATTCAAGATGCAAACCAACTTTACTATTTAACCCCTTCAGATATTGCTATGTTGACTGTCAACTACATCCAGAAAGGCCTTCTCTTCAAGAAGCCTGTTAATCAACAAGATTTCATCAATAACCTCTTGTATAACCTCAAACACTCTCTTTCTCTCGCCCTCGTTCATTTCTATCCACTGGCTGGCCGCCTCGTTACCAAAAAATCCCAAGATCCTCCCTCTTATTATGTTTTCATAGATTGCAGTAACAGTCCCGGAGCCAGATTCATCTATGCAACTTTAGATATGACCATATCTGACATCCTCTCACCCATTGACGTCCCACCCATTGTTCAGTCATTTTTTGACCACCACAAAGCAGTCACCCATGACGGACATACCATGCCTTTATTGTCCATCCAAGTCACTGAACTTGTAGATGGCGTTTTTATTGGTTGTTCCATGAATCACTGTATTGCTGATGGGACTTCTTATTGGAATTTCTTTAATACATGGTCTCACATCTTTCAAGCTCAAGGGCAAGGGCATGGGCATGATGATGTACCAATTCCGCACCCACCGATTCACAATCGCTGGTTTCCAGAAGGTTGCGGTCCACTAATCAATCTTCCCTTCAAACATCATGATGAGTTTATTAGCAGATATGAAACACCAAAACTTAGAGAGAGGGTCTTCCACTTTTCAGCAGAGTCCATTGCGAAACTGAAAGCAAAGGCCAACTTGGAGTCTAATACAAACAAAATCTCTTCATTCCAATCTTTGTCAGCACTCGTTTGGAGATCCGTAATTCGTGCGCGCCGCCCATCATATGACCAGAGAACCAGTTGCAAGTTGGCCACAAACAATCGATCAAGAATGGAACCGCCTCTGCCTCAGGAATATTTTGGAAACTCAATTTATGTAGTTGGTGCAGAGGCAACAGTAGGGGAATTGGTTGAGAAGGATCTGGGATGGGCAGCATGGAAGTTGCATCTGGCTGTTGCAAACCATAACGACAAAGCGGTGCGCCAGTTCCTTAAAGAATGGGTACAATCTCCTGTCGTCTTTCAACCGGGTCGGTTATTTGACCCGTTTACTGTGATGATGGGTAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGGAATGGGAAAAGCGGTGGCGGTTCGAAGTGGGTATGCTAACAAATTTGATGGAAAAGTGACATCGTATCCAGGGCACGAAGGAGGGGGAAGCATTGATTTGGAAATGTGTCTTTCGGCAGATACAATGAGTGCGCTGGAATCAGACGAGGAATTCATGAATTCGGTTTCAGAGTACAATCCCCTCTACTAG 1374 0.4454 MSSPAVLRVSECFIKPQHPIQDANQLYYLTPSDIAMLTVNYIQKGLLFKKPVNQQDFINNLLYNLKHSLSLALVHFYPLAGRLVTKKSQDPPSYYVFIDCSNSPGARFIYATLDMTISDILSPIDVPPIVQSFFDHHKAVTHDGHTMPLLSIQVTELVDGVFIGCSMNHCIADGTSYWNFFNTWSHIFQAQGQGHGHDDVPIPHPPIHNRWFPEGCGPLINLPFKHHDEFISRYETPKLRERVFHFSAESIAKLKAKANLESNTNKISSFQSLSALVWRSVIRARRPSYDQRTSCKLATNNRSRMEPPLPQEYFGNSIYVVGAEATVGELVEKDLGWAAWKLHLAVANHNDKAVRQFLKEWVQSPVVFQPGRLFDPFTVMMGSSPRFNMYGNEFGMGKAVAVRSGYANKFDGKVTSYPGHEGGGSIDLEMCLSADTMSALESDEEFMNSVSEYNPLY. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01461 457 Pfam Transferase family 12 447 - -
Seca4g01461 457 Gene3D - 227 442 IPR023213 -
Seca4g01461 457 FunFam Tryptamine hydroxycinnamoyl transferase 225 443 - -
Seca4g01461 457 Gene3D - 9 219 IPR023213 -
Seca4g01461 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01461 Seca-Chr4 23721410 23722783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01461 32 441 Monolignol Biosynthesis Gene Families AT5G48930 28.505 1.90e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01461 - - gmx:100787228 730.709