Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01457 ATGCATGTTAAACTTGCTGATTTTGGGTTAGCTAGAGAAGATATATGTGATGAGATGACTTGTGAGGTTGGTAGTTTCCGATATATGGCTCCTGAGTTATTCAACAAAGATCCACTTCCAAAAGGAACAAAGAAATTCTATGATCGCAAGGCGGATGTCTATAGTTTTGCAATGGTTCTGTGGTCAATAATAAAAAACCAAACTCCATTTAAAGAAAGGAAAGACTTGATGGCTGCATATGCTGCAATAAACATATGTAATTACTTGCAGCTATTCCAGTTCTAA 285 0.3614 MHVKLADFGLAREDICDEMTCEVGSFRYMAPELFNKDPLPKGTKKFYDRKADVYSFAMVLWSIIKNQTPFKERKDLMAAYAAINICNYLQLFQF. 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01457 94 ProSiteProfiles Protein kinase domain profile. 1 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01457 94 SUPERFAMILY Protein kinase-like (PK-like) 1 84 IPR011009 -
Seca4g01457 94 Gene3D Transferase(Phosphotransferase) domain 1 1 90 - -
Seca4g01457 94 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 80 - -
Seca4g01457 94 Pfam Protein kinase domain 2 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01457 Seca-Chr4 23645967 23646361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01457 2 82 MAP Kinase Kinase Kinase AT5G66710 59.259 1.86e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca4g01457 Pkinase 9.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01457 - - lja:Lj2g3v1780830.1 124.79