Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01456 ATGGATAAGGATCCTTTCAATTTTTCACATATGGATATGCAAGCTGATTTCATTCTAGATAATATACCGGTAACACATTTTGACTCTCTTGATGACATGCCACAATCTACTGTTGTTGATGAACCCCATGTCGAGCCTTATGTTGGGATGGAATTCAATTCATTAGAAGAAGTTGTAGGATTTTATAATTCATTTGCAAAGGCAAAAGGGTTTGGGATTCGTACTGGCTCCAGTAAAAAGAATTATTGCATTTTGGTATGTGTTAGGGAAGGTGAACGTCCGGTGAAAAGTGATAAAAATGAAAAGGATAATGGTATCATGAGAGAAGTTAAGAGAAAATGCTCAACCATGCTCATGGGATGTCAAGCGTCACTTACTGTGTCAAAGGATATGAAACGAGATAGATGGGTTATAAAATATTTTGATAATAATCACAATCATGTCATGGCTAGTCCTAAGAGTGTGTCTTATTTAAAGTGTCATAAAAAAATGAGTATTGCTGCCAAAAATCTTGTTGAGAAGTTTAGTGAAGAAGGTTTACCTACTGGAAAGGTTGCTTCAATGTTTGATGGTAGTGGCTTAGCTTTTTCTAATAGAGATTGTTGGAATCATATGAAAAATGTTCGTTTGAAGAATTTGGATGTTAGAGATGCACAAGCTGTTTTTAATTATTGCAAGCACAAGCAAGCTCAAGATTCTGATTTTTTCTATTCAATACAAATTGATGATGATGCTAGAATTGTAAATTTCTTTTGGGTGGATGCTAGATCAAGGAAGATGCCAATATCTATAATAACAGATCAAGATTTAGCTATTGGAGTTGCGGTGGCCAAGGTATTTCCACAAACTCGTCATCGTCTATGTTTGTGGCACATTAGAAAGAAGTTTCCTGAAAAGCTTGCACATATATATCACAAAAATTCAATATTCAAGCATGAGCTGAAGAGGTGCATTCGAGAATCTCCAACCATTAAAGATTTTGAAGATGATTGGCAACGTATAATGGAGGTGTATAATTTGCAGGACAATGAATGGCTTCAGAGATTATTTGAAATTAGGGAATCATGGATACCAGTCTATAATCGAAGCACTTTTTTTGGTGGTATGAATACTACACAAAGAAGTGAGAGTATCAATTCATTTTTTGACTCATTTGTTGATGGAAGCACAACACTTCAAGACTTTGTGGTAAAGTATGAGAAGGCAATAAATAATCGGTATGAGGATGAAAAAAGAGAGGACTTTGAGTCTAGACATAAATCACGCATTTTGAGTATCGGCTCGAAAATTGAGGAGCATGCTGCATCAGTTTATACTAGGAATGTTTTTGGAAAGTTTCATAATGAGCTTGCAAGTGTTAGCCAGTTTACAAAGGAGAAGATTGAGAAAAATAGCTCACAATGTAAGTATCGAGTATCTAATTGTTTTAATGCTCGGGATACATTCATTGTTGATATAAATTTAGAGTCAAAGAATGCTAGATGTGGTTGTCAACTTTTTGAATTCATGGGAATACTCTGTAGGCACATTTTGGTAATTTTTCAAGCCAAAAATATTATTCAAATTCCTAGTGAGTATATTCTGGAGCGTTGGACCAAGGAAGCCAATAGATATATCGAGGCTGGTGCTCTTGATATTCAGAATCGTGAATCAGATGTTTTGAGAAGTATGCATGTGCAACGTCAATTTGAAAATTTTGCTAATTTGGCCAAAAGATCAGAAGATGCATATAAGTTTATTGTAGGAGAATTTGATCGTGTTTATGAGATAGCCTCTACAATCGGAACAGAAATGTCAAATCTCAATGAAGCTCCTCTAGAGCCAAACAATCAGAATTTTATGTCTGACACAAATTATGATGATTCAAGTTTCAATATTAAGAATCCACATATATCACAGACAAAAGGTAGGAAAAGGAATGATTCTGACAAATTGCCTCTAGCAGGAAGATATAAAAGTGATCTTGAATTGTCAATGAACAAGTCCTTAGTCAAAAGGACCGCATGCAAATCTTGTGAAGAATATGGTCACTACCAATCAACTTGTAAACAGAAGCGAATGTAA 2064 0.3498 MDKDPFNFSHMDMQADFILDNIPVTHFDSLDDMPQSTVVDEPHVEPYVGMEFNSLEEVVGFYNSFAKAKGFGIRTGSSKKNYCILVCVREGERPVKSDKNEKDNGIMREVKRKCSTMLMGCQASLTVSKDMKRDRWVIKYFDNNHNHVMASPKSVSYLKCHKKMSIAAKNLVEKFSEEGLPTGKVASMFDGSGLAFSNRDCWNHMKNVRLKNLDVRDAQAVFNYCKHKQAQDSDFFYSIQIDDDARIVNFFWVDARSRKMPISIITDQDLAIGVAVAKVFPQTRHRLCLWHIRKKFPEKLAHIYHKNSIFKHELKRCIRESPTIKDFEDDWQRIMEVYNLQDNEWLQRLFEIRESWIPVYNRSTFFGGMNTTQRSESINSFFDSFVDGSTTLQDFVVKYEKAINNRYEDEKREDFESRHKSRILSIGSKIEEHAASVYTRNVFGKFHNELASVSQFTKEKIEKNSSQCKYRVSNCFNARDTFIVDINLESKNARCGCQLFEFMGILCRHILVIFQAKNIIQIPSEYILERWTKEANRYIEAGALDIQNRESDVLRSMHVQRQFENFANLAKRSEDAYKFIVGEFDRVYEIASTIGTEMSNLNEAPLEPNNQNFMSDTNYDDSSFNIKNPHISQTKGRKRNDSDKLPLAGRYKSDLELSMNKSLVKRTACKSCEEYGHYQSTCKQKRM. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01456 687 Pfam SWIM zinc finger 484 518 IPR007527 GO:0008270
Seca4g01456 687 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 585 IPR031052 GO:0006355
Seca4g01456 687 Pfam MULE transposase domain 255 295 IPR018289 -
Seca4g01456 687 Pfam FAR1 DNA-binding domain 61 149 IPR004330 -
Seca4g01456 687 SMART 26again6 493 520 IPR006564 GO:0008270
Seca4g01456 687 MobiDBLite consensus disorder prediction 624 647 - -
Seca4g01456 687 ProSiteProfiles Zinc finger SWIM-type profile. 482 518 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01456 Seca-Chr4 23626225 23628486 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g01456 FAR1 4.8e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01456 - - mtr:112420966 654.055