Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01455 ATGAGTTCCCCTGCCGTTCTTCGCGTTTCAGAATGCTTCATCAAGCCGCAGCACCCCACCCAAGAAGATGCAAACCAACTTTACTATTTAGCCCCTTCAGATATTGCTATGTTGAATGCCAACTACATCCAGAAAGGCCTTCTCTTCAAGAAGCCTGTTAATCAACAAGATTTCATCAATAATCTCTTGTATAAGCTCAAACACTCTCTTTCTCTCGCCCTCGTCCATTTCTATCCATTAACTGGCCGCCTTGTTACCAAAAAATACCAAGATCCTCCCTCTTATTATGTTTTCGTAGATTGCAGTAACAGTCCTGGAGCCAGATTCATTTATGCAACTTTAGATATGACCATATCTGATATTCTCTCCCCAATTGACGTCCCACCCATTGTTCAGTCATTTTTTGACCATGACAGAGCAGTCAACCATGACGGCCATACCATGCCTTTATTGTCCATCCAAGTCACTGAACTTGTTGATGGAGTTTTTATTGGCTGTTCCATGAACCACTGTATTGCTGATGGGACTTCTTATTGGAATTTCTTTAATACATGGTCTCACATCTTTCAAGATGTTGATGTTCCCATTCCGCACCAACCCATTCACAATCGCTGGTTTCCAGAAGGTTGCGGTCCACTAATCAATCTTCCCTTCAAACATCATGATGAGTTTATTAGCAGATATGAAACACCAAAACTTAGAGAGAGGGTCTTCCACTTTTCAGCAGAGTCCATTGCAGAACTGAAAGCAAAGGCCAACTTGGAGTCTAATACAACCAAAATCTCTTCATTCCAATCTTTGTCAGCACTCGTTTGGAGATCCGTAATTCGTGCGCGCCGCTCATCATATGACCAGAGAACCAGTTGCAAGTTGGCCACAAACAATCGAACAAGAATTGAACCGCCTCTGCCTCAGGAATATTTTGGAAATTCAATTTATTTAGTCGGTGCAGAGGCGACGGTAGGGGAATTGCTTGAGAAGGATCTGGGATGGGCAGCATGGAAGTTGCATCTGGCTGTTGCAAACCATAACGATAAAGCGGTGCGTCAGTTCCTTAAAGAATGGGTACAGTCTCCTGTCGTCTTTCAACCGGGTCAGTTATTTGACCCGTTTACTGTGGCGATGGGTAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGTAATGGGGAAAGCGGTGGCGGTTAGAAGTGGGTATGCTAACAAATTTGATGGAAAAGTGACATCTTATCCAGGTCATGAAGGAGGGGGGAGCATTGATTTGGAAATGTGTCTTTCGGCGGATACAATGAGTGCGCTGGAATCAGACGAGGAATTCATGAATTCGGTTTCAGAGTCCAATCCCATCTACTAG 1356 0.4373 MSSPAVLRVSECFIKPQHPTQEDANQLYYLAPSDIAMLNANYIQKGLLFKKPVNQQDFINNLLYKLKHSLSLALVHFYPLTGRLVTKKYQDPPSYYVFVDCSNSPGARFIYATLDMTISDILSPIDVPPIVQSFFDHDRAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHCIADGTSYWNFFNTWSHIFQDVDVPIPHQPIHNRWFPEGCGPLINLPFKHHDEFISRYETPKLRERVFHFSAESIAELKAKANLESNTTKISSFQSLSALVWRSVIRARRSSYDQRTSCKLATNNRTRIEPPLPQEYFGNSIYLVGAEATVGELLEKDLGWAAWKLHLAVANHNDKAVRQFLKEWVQSPVVFQPGQLFDPFTVAMGSSPRFNMYGNEFVMGKAVAVRSGYANKFDGKVTSYPGHEGGGSIDLEMCLSADTMSALESDEEFMNSVSESNPIY. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01455 451 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 442 - -
Seca4g01455 451 FunFam Tryptamine hydroxycinnamoyl transferase 219 437 - -
Seca4g01455 451 Gene3D - 9 213 IPR023213 -
Seca4g01455 451 Gene3D - 221 436 IPR023213 -
Seca4g01455 451 Pfam Transferase family 12 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01455 Seca-Chr4 23592425 23593810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01455 33 435 Monolignol Biosynthesis Gene Families AT5G48930 27.506 1.76e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01455 - - gmx:100787228 707.983