Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01454 ATGTTGTCTATGAACTACATCCAGAAAGGCCTCCTATTCAAAAAGCCCTCATCACTTGTTAACCAACAAGATTTCATCGATAATCTGTTGGAGAAGCTCAATCACTCCCTTTCTCTTGCCCTCTTCCATTTCTACCCTTTGGCTGGCCGCCTTGTCACTGAAAAAACCCAAGACCCTCCCTCTTATTCTATCTTCGTTGATTGCAAAAACAGTTCTGGTGCTAAATTTATCTATGCAACTTTGGACATCACATTATCCGACATCCTCTCCCCTGTTGACTTTCCACCGATTGTTCAGTCATTGTTTGATCTCAACAGAGCAATCAACCACGATGGTCACACCTTGCCCTTGTTATCCATCCAAGTCACCGAACTTGTGGACGGTGTTTTCATAGGTTGTTCCATGAACCACTGTATTGCTGACGGGACTTCTTATTGGAACTTCTTTAATACATGGTCTCACATCTTTAAAGCTCAAAGGCAAGGGCATGAGCATGACCAACCTATTCACAATCGATGGTTTCCAGAGGGTTGCGGTCCACTAATCAATCTTCCCTTCAAACATCATGATGAGTTTATTAACAGATTTGAATCACCCAAGCTGAGGGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCGAAACTAAAAGCAAAGGCTAACTTACAGTCAAATAGCACCAAAATCTCTTCATTCCAATCCTTATCAGCACATGTTTGGAGATCCATAACTCGCGTGCGTGGCCTAACATATGATCAGAAAACAAGTTGTATAATGGAACCGCCGCTGCAAAACGAGTACTTTGGAACCTCAATTAATGTGGTGAGTGCAGAGGCGAAGGCAGGGGAATTGGTTGAGAATGATCTGGGATGGACAGCATGGAGGGTTCACCTGGCTGTTGCAAACTTTAACGACAGTGTGGTGCGTCAATTGCTTAAAGAATGGTTACAATCTCCTGTTGTCTTCCAACCTAGTCTTCACTTTGATCCATGCAGTGTGGCGATGTCATGTTCACCAAGGTTTAACATGTATGGGAATGAATTTGGAATGGGGAAAGCTGTGGCTATTAGAAGTGGGTATGCTAACAAATTTGATGGGATGGTGACAGCATACGAAGGATATGAAGAAGGGGGATGCATAGATTTGGCTGTGTCCCTTTCGCCTGATGCAATGAGGGCACTGGAATCAGACGAGGAGTTCATGGAGGCAGTTTCTGTGATGAGTTCCCCTGCCGTTCGTCGCGTTTCAGAATGTTTTATCAAACCGCTGCACCCAACTCAAGAGTCAAACCATATCTGTTATTTAACCCCTTGGGATATTGCTAGGTTGTCTATGCACTACATCCAGAAGGGCCTCCTTTTCAAAAAGCCACATAACCAACAACATTTCATTGATAATCTGTTGGAGAAGCTCAAGCACTCCCTTTCTCTTGCCCTCTTCCATTTCTATCCCTTGGCTGGCCGCCTTGTTACTCAAAAAACCCAAGACCCTCCCTCTTATTCTGTTTTCATTGATTGCAGTGACAATAATTCCGGAGCTAGATTCATCTATGCAACTTTGGACATCACCATATCAGACATCCTCTCCCCCGTTGATGTTCCATCGCTTGTTCAGTCATTGTTTGATCTCCACAGAGCAATCAACCATGATGGTCACACCATGCCCTTATTATCCATCCAAGTCACTGAACTTCTGGATGGGGTTTTTATTGGTTGTTCCATGAACCACTGCATTGGTGACGGGACTTCTTTTTGGAACTTCTTTAATTCATGGTCTCACATCTTTCTAGCTCAAGCTCAAGGGCATGAGAATGATGATGTTCCTATTTTGCACCAACCCATTCACAATCGCTGGTTTCCGGAAGGTTGCGGTCCAATTATCAATCTTCCCTTCAAACATCATGACGAGTTCATTAACAGATTTGAATCACCCAAACTGAGGGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCGAAACTGAAAGCAAAGGCTAACTTACAATATTCAAATGGCACCAAAATCTCTTCATTCCAATCCTTATCAGCACATGTTTGGAGATCCATAACTCGCGCGCGCCGCCTAACACATGATCAGAAAACAAGCTGCATGTTAGCCATAAACAATCGGTCAAGAATGGAACCGCCTCTGCCAAACGAGTACTTTGGAACCTCAATTAATGTGATGAGTGCAGAGGCGAAGGCAGGGGAATTGGTTGAGAATGATCTGGGATGGGCAGCATGGAAGGTTCACCTGGCTGTTGCAAACCATAACGATAGTGTAGTGCGTCAATTGCTTAAAGAATGGCTACAATCTCCTGTGGTCTACCAACCTAGTCTCCACTTTGATCCCAATAATGTGGCGATGTCAAGTTCACCAAGGTTTGACATGTATGGGAATGAATTTGGAATGGGGAAGGCGGTGGCTGTTAGAAGTGGGTATGCTAACAAATTTGATGGGATGGTGACAGCATACGAAGGATATGAAGGAGGGGGAAGCATAGATTTGGCTGTGTCCCTTTCGCCTGATGCAATGAGAGCCCTGGAATCAAACTACGAGTTCATGGAGGCAGTTTCTGTGTCCAATCCCCTGTAA 2595 0.4432 MLSMNYIQKGLLFKKPSSLVNQQDFIDNLLEKLNHSLSLALFHFYPLAGRLVTEKTQDPPSYSIFVDCKNSSGAKFIYATLDITLSDILSPVDFPPIVQSLFDLNRAINHDGHTLPLLSIQVTELVDGVFIGCSMNHCIADGTSYWNFFNTWSHIFKAQRQGHEHDQPIHNRWFPEGCGPLINLPFKHHDEFINRFESPKLRERIFHFSAESIAKLKAKANLQSNSTKISSFQSLSAHVWRSITRVRGLTYDQKTSCIMEPPLQNEYFGTSINVVSAEAKAGELVENDLGWTAWRVHLAVANFNDSVVRQLLKEWLQSPVVFQPSLHFDPCSVAMSCSPRFNMYGNEFGMGKAVAIRSGYANKFDGMVTAYEGYEEGGCIDLAVSLSPDAMRALESDEEFMEAVSVMSSPAVRRVSECFIKPLHPTQESNHICYLTPWDIARLSMHYIQKGLLFKKPHNQQHFIDNLLEKLKHSLSLALFHFYPLAGRLVTQKTQDPPSYSVFIDCSDNNSGARFIYATLDITISDILSPVDVPSLVQSLFDLHRAINHDGHTMPLLSIQVTELLDGVFIGCSMNHCIGDGTSFWNFFNSWSHIFLAQAQGHENDDVPILHQPIHNRWFPEGCGPIINLPFKHHDEFINRFESPKLRERIFHFSAESIAKLKAKANLQYSNGTKISSFQSLSAHVWRSITRARRLTHDQKTSCMLAINNRSRMEPPLPNEYFGTSINVMSAEAKAGELVENDLGWAAWKVHLAVANHNDSVVRQLLKEWLQSPVVYQPSLHFDPNNVAMSSSPRFDMYGNEFGMGKAVAVRSGYANKFDGMVTAYEGYEGGGSIDLAVSLSPDAMRALESNYEFMEAVSVSNPL. 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01454 864 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 415 856 - -
Seca4g01454 864 FunFam Tryptamine hydroxycinnamoyl transferase 633 852 - -
Seca4g01454 864 Pfam Transferase family 416 855 - -
Seca4g01454 864 Pfam Transferase family 1 401 - -
Seca4g01454 864 Gene3D - 1 178 IPR023213 -
Seca4g01454 864 Gene3D - 407 623 IPR023213 -
Seca4g01454 864 Gene3D - 188 396 IPR023213 -
Seca4g01454 864 Gene3D - 633 852 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01454 Seca-Chr4 23543362 23552048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01454 454 849 Monolignol Biosynthesis Gene Families AT5G48930 28.125 3.04e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01454 - - vum:124831304 1157.13