Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01444 ATGGAGGAAGAAAGAGACTGTTGTTCCACCAATTCGACCATCACAAGCGGCAGCGGCAGCAGCTTCCCGGAGAAGCGTAAGAGACAGCATCAAGACAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTTGCGGAGATTAGAGAACCCAACAAAAGGTCCAGGATTTGGTTGGGCTCTTACACCACACCGGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTATTTAAGAGGACCTTCCGCTCGCCTTAACTTCCCGGAATTGTTATTCCAAGACGACGTCGTTTACGGTGATGGTTCCATCCAACAAGGCGACATGTCCGCCGATTCAATACGCAAAATTGCCACACAAGTTGGTGCCAGAGTGGACGCTCTCCAAACAGCTCTTAAGGCATCCTCTAGCTCCTCTTCCAGTCAAATCACCTCAGAGAAACCGGACTTGAATGAGTATCCAAAACCTGAAGATTAA 483 0.5072 MEEERDCCSTNSTITSGSGSSFPEKRKRQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDDVVYGDGSIQQGDMSADSIRKIATQVGARVDALQTALKASSSSSSSQITSEKPDLNEYPKPED. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01444 160 MobiDBLite consensus disorder prediction 134 160 - -
Seca4g01444 160 MobiDBLite consensus disorder prediction 134 150 - -
Seca4g01444 160 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g01444 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 160 - -
Seca4g01444 160 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Seca4g01444 160 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Seca4g01444 160 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Seca4g01444 160 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Seca4g01444 160 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Seca4g01444 160 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Seca4g01444 160 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Seca4g01444 160 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Seca4g01444 160 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Seca4g01444 160 MobiDBLite consensus disorder prediction 8 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01444 Seca-Chr4 23372378 23372860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01444 28 160 AP2-EREBP Transcription Factor Family AT2G23340 58.904 1.35e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g01444 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01444 K09286 - gmx:732579 214.927