Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01439 ATGGTGAAGAGAAAGCAGTTTGACATGTGGATGCTGATGCTATTGCTGCTGTCAAACCCATTCTGTTACTGCTCCAAACACGGCGATCATCATCCTCCACCGTCAGATGCTGGCGCTCTGCTTGCCTTCAAATCAAAAGCTGATCTGAACAACTGCCTCAACTTCTCCCGCCACCTCTATTTCTGCAAGTGGCAAGGCGTCGAATGCAACAACGAAACCAAAGTGGTCCATCTCCTTCTGCGAGGTTTAGATCTCGGAGGCGTTTTCGCTCCTCACACATTGTCCCGTCTTGACCAGCTACGAGTCCTTAGTTTGCAAAACAACTCCCTCACCGGACCCATACCTGACCTTTCTGGTCTCTTCAATCTCAAAACCCTCTTCCTTGACAACAACCACTTCAACGGTTCTCTTCCTCCTTCTCTCTTCTCCCTTCACAGGCTTCGAACCTTGGATTTCTCTCATAACAATCTCTCCGGTCCCATCCCCGTCGCTTTCAACAACCTCGACCGTATCATCTACCTTTCTCTTAGCTGGAACGCTTTCAACGGTACCGTTCCTCCTCTCAACCAGTCTTCTCTCAAAACCTTCAACGTCTCCGGTAACAATCTCACCGGCGCCATTCCCGTTACGCCGACGCTGTTCAGTCTCCAGCCATCTTCCTTCGCTTTCAACCCTGGTCTCTGCGGCGAAATCATCCGCAGAGAGTGCCGCCCTACCGCGCCTTTCTTCGCGCCGTCCTCGCCGCCGACGGTAGGGCTCGGCCAGAGCGTGCAGGTTCACGGCTTAATCCGGCAGCCGTACGAGAAGAGGCACGACCGGAGGGCGGTGATCATCGGGTTCTCTGCCGGAGTTTTTGTTCTGATCGGTTCGCTGGCGTGCTTCGTTGTGGCCATAAAGAAACAGAGAAGCAAGAAAGGAGTTTCTTCTTCAGGTTCAAGTATAATGGCTTCGGATGCAGCGGCAACAGCAGAAGCTGCGGTTGTGGTGCAAATGGAGCAAGAGAGGGAGTTGGAGGAGAAGGTGAAGAGAGCGCAAGTGGCGAAGAGTGGGAGTTTAGTATTCTGTGCGGGTGAGGCACAGGTATATACCCTGGACCAGTTGATGAAAGGTTCTGCGGAGCTATTGGGTAGAGGGAGTTTGGGAACAACTTATAAGGCGGTGCTTGACAACCGTCTGATCGTAACGGTGAAGCGCCTTGATGCGAGTAAAATGGCTGCGCACGCAACCAAGGAAGTGTTTGAGCGACACATGGAATCAGTGGGTGGTCTTCGTCATCCTAATTTGGTTCCTCTTAGGGCTTATTTTCAGGCCAATCAAGAGAGACTCATTATCTATGACTACCAGCCCAATGGCAGTCTCTTCTCCCTCGTACACGGTTCCAGATCAAGCAGGGCAAGGCCATTGCACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAGGGCCTGTCCTACATCCACCAGGCATGGAGGCTGGTCCATGGCAATCTCAAGTCCTCCAATGTTCTCCTTGGACCTGATTTTGAGGCATGCATCACAGACTACTGCCTCTCTGTGTTGACCAACCCATCAGTTTTCGATGAAGATGGTGATTCTGCAGCCTACAGAGCTCCAGAGACTCGCAATCCAAATCACCAGCCAACCCCCAAATCCGACGTTTATGCATATGGGATTTTGTTGCTGGAGCTTCTGACGGGGAAATCTCCTTCCGAGCTCCCATTCATGGTTCCTGGTGATATGTCTAGTTGGGTGAGATCCATCAGGGATGACAATGGGGGCGAAGACAACAGAATGGAAATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACATCGCCTGAGCAGAGGCCCACAATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTATTATTGGAGGATAGTGAATTGGACCTACCCAGTAGTAACGCCTTGCCTTAA 1953 0.512 MVKRKQFDMWMLMLLLLSNPFCYCSKHGDHHPPPSDAGALLAFKSKADLNNCLNFSRHLYFCKWQGVECNNETKVVHLLLRGLDLGGVFAPHTLSRLDQLRVLSLQNNSLTGPIPDLSGLFNLKTLFLDNNHFNGSLPPSLFSLHRLRTLDFSHNNLSGPIPVAFNNLDRIIYLSLSWNAFNGTVPPLNQSSLKTFNVSGNNLTGAIPVTPTLFSLQPSSFAFNPGLCGEIIRRECRPTAPFFAPSSPPTVGLGQSVQVHGLIRQPYEKRHDRRAVIIGFSAGVFVLIGSLACFVVAIKKQRSKKGVSSSGSSIMASDAAATAEAAVVVQMEQERELEEKVKRAQVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGSLGTTYKAVLDNRLIVTVKRLDASKMAAHATKEVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLVHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTNPSVFDEDGDSAAYRAPETRNPNHQPTPKSDVYAYGILLLELLTGKSPSELPFMVPGDMSSWVRSIRDDNGGEDNRMEMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSELDLPSSNALP. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01439 650 SUPERFAMILY Protein kinase-like (PK-like) 373 628 IPR011009 -
Seca4g01439 650 Pfam Protein kinase domain 373 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01439 650 Coils Coil 649 650 - -
Seca4g01439 650 SUPERFAMILY L domain-like 57 229 - -
Seca4g01439 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 631 IPR046959 -
Seca4g01439 650 Gene3D Transferase(Phosphotransferase) domain 1 449 640 - -
Seca4g01439 650 FunFam Nuclear pore complex protein NUP107 34 187 - -
Seca4g01439 650 Gene3D Phosphorylase Kinase; domain 1 333 447 - -
Seca4g01439 650 ProSiteProfiles Leucine-rich repeat profile. 99 121 IPR001611 GO:0005515
Seca4g01439 650 Pfam Leucine rich repeat 122 180 IPR001611 GO:0005515
Seca4g01439 650 Gene3D Ribonuclease Inhibitor 190 238 IPR032675 -
Seca4g01439 650 Gene3D Ribonuclease Inhibitor 34 189 IPR032675 -
Seca4g01439 650 ProSiteProfiles Protein kinase domain profile. 369 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01439 Seca-Chr4 23262574 23266674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01439 36 648 Receptor kinase-like Gene Family AT5G43020 59.905 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g01439 Pkinase 8.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01439 - - cam:101511242 1016.91