Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01419 ATGGCTTCGGCAAAGAAAGAGATGGATCGCATTAAAGGGCCATGGAGCCCCGAAGAAGACGAAGCGTTACGGAGGCTGCTTCAGACTTACGGGCCGAGAAACTGGTCACTGATAAGCAAATCCATTCCGGGTCGATCCGGGAAGTCGTGCCGGTTGCGGTGGTGTAACCAACTGTCTCCGGAGGTGGAGCACAGGCCTTTCACTTCAGAGGAAGACGAGACCATTATCAAAGCACATGCTAAGGTTGGCAACAAATGGGCTACAATTGCTCGTTTGCTTAATGGCCGCACCGACAACGCTATAAAAAATCACTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCTCCGATACTCTCACCGATCACCACCAGCCTCACAAAAGATCGGCCAGTGTTGGTGCGGACACCATTTCGGGCTTCTACTTGACTCCGAGTAGCCCATCCAGATCTGATTTGAGCGATTCTAGTTTACCTATTGTGTCTTCAACTCCGACTCTGTTTCCAAGGAGCGCAACCGTCGTGGAAACTGCGTCTTCTTCTGCCACTGATCCACCCACGTCACTCAGCTTATCTTTGCCCGGATCCGATTCCTGTGATGTCTCTAACAAAGGATCTGGCACGAATCTGGTATCCGGTTGCAGTGATAAATTTTGTTTCGAGAAACAGTTGTTCAGCGCAGAGTTTTTGGCCGTGATGCAAGAGATGGTACGAATGGAAGTGAGGAATTACATGTCTGGGATAGAGCATAAAGGTCTGTGTATGCAGACCGAAGCCATTAGAAACGCTATGATGAAGCGTATGGGAATTGGCAGGGTTGAGTAG 825 0.497 MASAKKEMDRIKGPWSPEEDEALRRLLQTYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTSEEDETIIKAHAKVGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSAISDTLTDHHQPHKRSASVGADTISGFYLTPSSPSRSDLSDSSLPIVSSTPTLFPRSATVVETASSSATDPPTSLSLSLPGSDSCDVSNKGSGTNLVSGCSDKFCFEKQLFSAEFLAVMQEMVRMEVRNYMSGIEHKGLCMQTEAIRNAMMKRMGIGRVE. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01419 274 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Seca4g01419 274 Pfam Myb-like DNA-binding domain 15 73 - -
Seca4g01419 274 SMART sant 63 111 IPR001005 -
Seca4g01419 274 SMART sant 11 60 IPR001005 -
Seca4g01419 274 MobiDBLite consensus disorder prediction 177 196 - -
Seca4g01419 274 PANTHER MYB PROTEIN-RELATED 12 152 - -
Seca4g01419 274 CDD SANT 14 56 IPR001005 -
Seca4g01419 274 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Seca4g01419 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Seca4g01419 274 FunFam MYB transcription factor 12 63 - -
Seca4g01419 274 Gene3D - 11 63 - -
Seca4g01419 274 Gene3D - 65 134 - -
Seca4g01419 274 FunFam Transcription factor MYB44 66 112 - -
Seca4g01419 274 CDD SANT 66 109 IPR001005 -
Seca4g01419 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Seca4g01419 274 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01419 Seca-Chr4 22928504 22929328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01419 5 274 MYB Transcription Factor Family AT4G37260 48.589 7.56e-93 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g01419 Myb_DNA-bind_6 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01419 K09422 - cpap:110818856 357.836