Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01408 ATGCCTACTAGCAAAGGATCGTTCAGCTCAACTGCGAACACAAGAAACAGAATTTGCCCATGCGGTGACAATATGTTGCTCCTTACTTCAACCAGCTACAAAAATCCAGGTAGAAGGTTCTGGCGTTGCCCAAATTGGATGAAACAGGGTACTTGTAACTATTTCGAATGGATGGATGATGACTATGGACAACCTTCAACATCTCATTGTAAACAATGTTCAGACATGGTGCTGCAAACATGGACATTGAAGGTATCAAAGTTGGAAAGGAAACTTCAGACTCAAAGAAGACATAAAAAAATCATCCTTGCTCTGCTTCTATTATCCTTCACCATTAATGTTATCCTTACTATCCTCTTCAGTGAAAATGGTGAATGTAATGCATGA 387 0.3953 MPTSKGSFSSTANTRNRICPCGDNMLLLTSTSYKNPGRRFWRCPNWMKQGTCNYFEWMDDDYGQPSTSHCKQCSDMVLQTWTLKVSKLERKLQTQRRHKKIILALLLLSFTINVILTILFSENGECNA. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01408 128 ProSiteProfiles Zinc finger GRF-type profile. 19 61 IPR010666 GO:0008270
Seca4g01408 128 PANTHER ZINC ION-BINDING PROTEIN 9 98 - -
Seca4g01408 128 Pfam GRF zinc finger 18 60 IPR010666 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01408 Seca-Chr4 22668301 22668981 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g01408 zf-GRF 1.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01408 - - vun:114179678 85.8853