Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01397 ATGGAGAGAACGCAAACACCAATTTCTAATTACATGGACAGAGTTCAGAAAGATATTACTAGTAATGTGAGAGGAGTATTAGTGGATTGGTTAGTAGAGGTTGCGGAGGAGAACAAGCTTCTCTCTGATATCCTTCATCTCTCTGTTTCCTACATTGACAGGTTCTTATCTGTGAACCCTGTCACTAAATCCAGGCTTCAATTGTCGGGTGTTTCCTCCATGCTCATTGCATCAAAGTATGAAGAAATTAATCCACCCCATGCCGAACAGTTCTGCAACATTACTGATAACACATATGACAAGGCAGAGGTTGCGAAAATGGAAGCTGACATACTCAAGTTACTAAAATTTGAACTGGGGAGCCCTACTGTTAAGACTTTCTTAAGGAGGTTTATTGGTATTGCTTGTGAGACTAAAAATGTGAGTTTGATTACTCATGCTGTTTGTTCTATTCATTTAAAAAGCTTTGTTATGTTTACTGATTGTATTCACTTTTTGTTAAAAATTAACTTTCAGGCTCCAAGTTTGCAGTTTGAGTTTCTGTGTTACTATCTTGCTGAACTAAGCCTGTTGGACAATCATTGTGTTAAGTTTTTGCCTTATTTTGTGGCTGCAGCTGTAGTATTTCTTGCTAGATTTATTGTTTGGCCTGAAGTTAATCCTTGGACATCAGCACTGCTTGAGTGCACTGGGTATATATCACTTCAACTGAGAGAATGTGTTTGCATCTTACATGATCTGTATATGGCAAGAAGGGGAGGATCTTTCCAAGCTACTAGAGAGAAATACAGTCAGCACAAGTTTAAACAAGTGGCAAACATGCCTTCGCCTCTACACTTACCAAATGATCTCTTTGAATATTAG 864 0.3831 MERTQTPISNYMDRVQKDITSNVRGVLVDWLVEVAEENKLLSDILHLSVSYIDRFLSVNPVTKSRLQLSGVSSMLIASKYEEINPPHAEQFCNITDNTYDKAEVAKMEADILKLLKFELGSPTVKTFLRRFIGIACETKNVSLITHAVCSIHLKSFVMFTDCIHFLLKINFQAPSLQFEFLCYYLAELSLLDNHCVKFLPYFVAAAVVFLARFIVWPEVNPWTSALLECTGYISLQLRECVCILHDLYMARRGGSFQATREKYSQHKFKQVANMPSPLHLPNDLFEY. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01397 287 FunFam Cyclin A1 155 273 - -
Seca4g01397 287 SUPERFAMILY Cyclin-like 2 119 IPR036915 -
Seca4g01397 287 SMART Cyclin_C_2 122 277 IPR004367 -
Seca4g01397 287 Gene3D - 8 113 - -
Seca4g01397 287 SMART cyclin_7 29 113 IPR013763 -
Seca4g01397 287 SMART cyclin_7 164 246 IPR013763 -
Seca4g01397 287 Pfam Cyclin, C-terminal domain 162 276 IPR004367 -
Seca4g01397 287 FunFam G2/mitotic-specific cyclin 7 120 - -
Seca4g01397 287 Pfam Cyclin, N-terminal domain 2 119 IPR006671 -
Seca4g01397 287 PANTHER CYCLINS 4 265 IPR039361 -
Seca4g01397 287 SUPERFAMILY Cyclin-like 172 277 IPR036915 -
Seca4g01397 287 Gene3D - 114 280 - -
Seca4g01397 287 ProSitePatterns Cyclins signature. 24 55 IPR006671 -
Seca4g01397 287 PIRSF Cyclin_A_B_D_E 1 284 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01397 Seca-Chr4 22596584 22598572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01397 1 286 Core Cell Cycle Gene Families AT5G43080 53.497 2.09e-101 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01397 K06627 - gmx:100776007 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01397 4 22596584 22598572 Seca4g01397 4 22596584 22598572 ECH