Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01393 ATGAGTGGTCCGTCACGAGAAGTGGAATCAAAAGAAGAGGAGAGGGAAGAAGAGGGTAACCGGCTGCTAGAAGATGAATCGGAGGAAGAAGAGGTGGCATATGAAGCGGGAGAGAAGATCCTGGTCGTAGATTTTGAGTTTGACTCCGTGGACGATTCTACCGTGCCTCCTTTCTCATGGAAGAAGCTATGGGTCTTCACTGGGCCTGGGTTCTTGATGAGCATAGCTTTCTTGGATCCGGGGAATCTGGAAGGGGATCTCCAAGCTGGAGCCATCGCCGGTTACTCCCTCCTCTGGCTTTTGATGTGGGCCACCTTCATGGGCCTCTTGATACAGCTTCTGTCTGCCAGGGTTGGTGTCGCTACAGGTCGCCACCTCGCTGAGCTATGTAGGGATGAGTATCCCAATTGGGCTCGCCTTGTGCTTTGGTTCATGGCTGAGCTCGCTTTGATTGGTGCTGATATTCAAGAGGTCATTGGTAGTGCCATCGCCATTCAAATTCTTAGCCGCGGACTCTTCCCCCTCTGGGTTGGTGTTCTAATTACTGCTTCCGATTGCTTTATGTTTTTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACCATGGGTCTTTCTTTTGCATGGATGTTTGGTGACGCACAACCTAGTGGAAAAGAGCTTTTGATGGGTATTTTGATTCCAAGACTCAGCTCAAAAACAATTCGTCAGGCTGTTGGCGTTGTTGGTTGTGTCATAATGCCTCACAATGTATTCCTGCATTCTGCTTTAGTGCAGTCGAGGAAGATTGATCCCAATAAGAAAGTTCGAGTACAAGAGGCTCTCAACTACTATTCAATTGAGTCGTCGGCTGCACTTTTAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTACGGTACAAAGCAGGCAAATAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAGTATGGAGGAGGACTCTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGACAGAGTAGCACCATCACTGGCACATATGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGTTGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGATCAGAAGCCTCACTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCTATACAAATTCCCTTTGCGTTGATTCCCCTCCTCACGATGGTCTCCAAAGAGCAGATCATGGGGACCTTTAGGGTTGGGCCTATTCTTGAGAGGGTGGCATGGACTGTTGCTGCATTGATAATAGTAATTAATGGATATCTCTTAGTAGATTTCTTCCTTTCTGAGGTGAAGGGCCTACTGCTTGGTTTTGTGGCCTGCTCCTGCACAGTTGCCTATGTGGCATTCATTGTATATTTGGTTTCACAGAGCGGTGCTCTTCCTTCCACTTGGGTTAATCGACTTCCTAAGGGGTTTTCTTTTACTGGGAATTAA 1569 0.457 MSGPSREVESKEEEREEEGNRLLEDESEEEEVAYEAGEKILVVDFEFDSVDDSTVPPFSWKKLWVFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGLFPLWVGVLITASDCFMFLFLENYGVRKLEAAFAVLIATMGLSFAWMFGDAQPSGKELLMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPNKKVRVQEALNYYSIESSAALLVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDVLNEWLNVLQSIQIPFALIPLLTMVSKEQIMGTFRVGPILERVAWTVAALIIVINGYLLVDFFLSEVKGLLLGFVACSCTVAYVAFIVYLVSQSGALPSTWVNRLPKGFSFTGN. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 142 168 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 172 191 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 197 218 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 246 269 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 353 372 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 381 398 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PRINTS Natural resistance-associated macrophage protein signature 415 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 38 500 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 Pfam Natural resistance-associated macrophage protein 84 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 NCBIfam Nramp family divalent metal transporter 68 437 - -
Seca4g01393 522 MobiDBLite consensus disorder prediction 1 18 - -
Seca4g01393 522 Coils Coil 8 28 - -
Seca4g01393 522 Hamap Divalent metal cation transporter MntH [mntH]. 49 471 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g01393 522 MobiDBLite consensus disorder prediction 1 30 - -
Seca4g01393 522 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 61 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01393 Seca-Chr4 22510653 22515436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01393 12 502 Inorganic Solute Cotransporters AT1G47240 80.754 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01393 K21398 - gmx:100791117 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01393 4 22510653 22515436 Seca4g01393 4 22510653 22515436 ECH