Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01378 ATGCAGTGCCTGTCAAGTAGGCTTTTGTGTTCTTCCAATTCGTTGTTTGGGTCAGCCGTCACTGCCACTCTTCCCTCTTCTTCTCTTAGATTTCCATCACTCTTTCGAAGGATCGCTAATTCAACACCTTCCTCCTCCTCCTCGATTCGCTTACGCAATTCTCCACCTCTGCGATCCACTGCTTCGTCATCGAGTGACTCGCCACAAATGGCTTCCAACGATTTTCAAGATCAAGACCAACGTATAGCAAAAATCTCCTCTGCGATCCGTGTGATCCCTGACTTTCCTAAGCCAGGTATTATGTTCCAAGATATAACCACGCTGCTTCTTGATACAAAGGCTTTCAGAGATACGATTGACTTGTTTGTTGAGAGGTACAGAGATCAAAATATTTCTGTTGTAGCAGGTATTGAAGCAAGAGGCTTTATATTTGGCCCACCTATTGCATTAGCTATTGGAGCAAAATTCGTCCCCATGAGGAAACCCAATAAATTGCCAGGAGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACTGACAAAATGGAGATGCACGTAGGGGCTGTACAACAGGGAGAACGAGCCTTAGTCATAGATGATCTTATTGCCACTGGGGGAACATTATGTGCTGCCATTAGGCTACTAGAACGTGTTGGTGTGCATGTTGTGGAGTGTGCTTGTGTGATTGAATTACCAGAGTTGAAGGGGCGGGAAAGGCTGGGCGATAAGCCGCTATTCGTCTTGGTTAAAGGAGCCTGA 762 0.4554 MQCLSSRLLCSSNSLFGSAVTATLPSSSLRFPSLFRRIANSTPSSSSSIRLRNSPPLRSTASSSSDSPQMASNDFQDQDQRIAKISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYRDQNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGTDKMEMHVGAVQQGERALVIDDLIATGGTLCAAIRLLERVGVHVVECACVIELPELKGRERLGDKPLFVLVKGA. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01378 253 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 72 251 - -
Seca4g01378 253 CDD PRTases_typeI 119 251 IPR000836 -
Seca4g01378 253 NCBIfam adenine phosphoribosyltransferase 86 250 IPR005764 GO:0003999|GO:0005737|GO:0006168
Seca4g01378 253 MobiDBLite consensus disorder prediction 41 76 - -
Seca4g01378 253 Hamap Adenine phosphoribosyltransferase [apt]. 85 252 IPR005764 GO:0003999|GO:0005737|GO:0006168
Seca4g01378 253 SUPERFAMILY PRTase-like 85 246 IPR029057 -
Seca4g01378 253 Gene3D - 72 251 IPR029057 -
Seca4g01378 253 Pfam Phosphoribosyl transferase domain 115 244 IPR000836 -
Seca4g01378 253 FunFam Adenine phosphoribosyltransferase 1 73 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01378 Seca-Chr4 22184015 22188852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01378 70 253 PRT Gene Family AT1G27450 82.065 1.27e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01378 K00759 - gmx:100777103 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01378 4 22184015 22188852 Seca4g01378 4 22184015 22188852 ECH