Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01358 ATGGCTCCCAGAGTGCCTCCTACGATCAACATTGAACCTGAAGACTGCCCTGAAGCAGTGATTGAGTGGTACAGAATCTCTGGCTTAGAAGATCGCAGAGAAAGTGCAAGAAGAAAGGACGTTGCTCTCAAAGCAAAGAAGCACCTTCGTTTTCTGGGTTGGAATTTTTGGTACATTGACAAGAAAGGTAGGTGGGAACTTCGTTACACATCACCCTCCACTGGCAAGAACTACATTTCTCTCAGAACTGCTTGCGAGAGCTGCATTCAAGAAGGAGGGTGCAACCCTGTCAATAATGGTACCCCAGAATCAGAAGGGTACCCTGATAGCCCTAAGGTTGAGGAACACACTTGTACTTCAAATTCTGCACAACCAAGTCAAGGAGAGAAAAGATCAATTTCCTCTTCTGAACAAACAGAATCAGAGACTCAACCAAGAAAATGCAGGGTGCAGCCAAAAAGAGGCAAGAAAAGAGAACGAAAATCTTCATCGGAAGATGAGTTGACTTCGGTGGTTAACACTGAATCTGAAGTTACCCCTAAAAAGTCATTGGTGTATCGATTAGGCACAAGGGCAAAGCAAGGTGATGAGGCGCAAAGTTCTTACCTTTCAAAGCGCAATCCTCGAACAATAGTTTCTTGGTTGATTGACAACGGTGTGGTTCTTCTAGATTCAAAAGTTTTTTGCCGAGGTACCAACAATGTGGTGAAGAATGGGAGGCTATTACGTAGTGGAATAGCTTGTGATTGTTGTGGTAATATTTTCACTCTGACTCGTTTTGAGACTCATGCTAGTTGTACAAGGCATAGACCTTCCACAAGTATCTTCTTGGAAAATGGAACGTCTTTGTTACAATGCCAAATGGATGCTCTTCGTTTTCTTGACAATATGCAAAGAGATAATTTTCAAGACAGAAACGAGAGCGTTTGTTCCATTTGTCGTTATGGTGGTGAACTTGTGCTCTGTGATCGTTGCCCTTCTTCTTTTCATCTCAGTTGTTTAGGTCTTGATCATGTCCCTGATGGTGATTGGTTCTGCCCACCATGTTGTTGCAGAATATGCAACAGACCCAGATGCAGAGAAGATTCTGAGGATGACGTGGATAATAACATACTCTCTTGTTGTCAATGTGAGCGCAAATTTCACATTGGTTGCCTCAAGAGTAAAGGGTTTTCTGACATGGAAGATCTTCCTAATCCTAACAACAAATGGTTTTGCAAAAAGGAGTGTGAGAACATATTTTGTACTCTGCAGAAGTTGGTGGGGAACCCAATTCGTGTGGCTGCTCATACTCTGGATTGGACTTTGTTGAAGACATTTAGAAGTGATGATAACTCTGGAGGAGATCTTTCACCTGATGGACTTGAAAGGCTGAGTCAAATTGAAAGCAAGTTGAGTGTGGCTCTTGGTGTGATGCTAGAGTGTTTTACTCCAGCTTTTGATGTTTACTCTGGGAGGGATATTTTGAGGGATGTTATTTTCAGTAGGGGTTCTGAATTTAATCGTCCTAACTGTGGTGGATTCTACACTGTGATTCTGGAGATGAATGATGAAGTGGTTTCTGTTGCTACTGTAAGGATTCATGGGCAGAAGGTTGCAGAATTACCCTTTGTGGCTACCAGTGAACAGTATAGAAAGCTTGGACTGTGTCGCATCTTGATGAATGAGCTTGAGAAGCAGTTGACTCAATTAGGAGTAGAGAGTATGGTTTTGCCTTCCTCTAATAATGCAGTAGACACATGGACTAACTCATTTGGCTTTGCAAGGATGACTGATTCAGATAAGTCTCAGTTTCTTGAGTACAGTTTTCTAGAATTTCAGGACACCACCTGGTGCCACAAACCATTATTGGTAAATCCTTCAATGAATTGCATGGCGTAA 1881 0.4232 MAPRVPPTINIEPEDCPEAVIEWYRISGLEDRRESARRKDVALKAKKHLRFLGWNFWYIDKKGRWELRYTSPSTGKNYISLRTACESCIQEGGCNPVNNGTPESEGYPDSPKVEEHTCTSNSAQPSQGEKRSISSSEQTESETQPRKCRVQPKRGKKRERKSSSEDELTSVVNTESEVTPKKSLVYRLGTRAKQGDEAQSSYLSKRNPRTIVSWLIDNGVVLLDSKVFCRGTNNVVKNGRLLRSGIACDCCGNIFTLTRFETHASCTRHRPSTSIFLENGTSLLQCQMDALRFLDNMQRDNFQDRNESVCSICRYGGELVLCDRCPSSFHLSCLGLDHVPDGDWFCPPCCCRICNRPRCREDSEDDVDNNILSCCQCERKFHIGCLKSKGFSDMEDLPNPNNKWFCKKECENIFCTLQKLVGNPIRVAAHTLDWTLLKTFRSDDNSGGDLSPDGLERLSQIESKLSVALGVMLECFTPAFDVYSGRDILRDVIFSRGSEFNRPNCGGFYTVILEMNDEVVSVATVRIHGQKVAELPFVATSEQYRKLGLCRILMNELEKQLTQLGVESMVLPSSNNAVDTWTNSFGFARMTDSDKSQFLEYSFLEFQDTTWCHKPLLVNPSMNCMA. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01358 626 SMART PHD_3 309 350 IPR001965 -
Seca4g01358 626 SMART PHD_3 351 410 IPR001965 -
Seca4g01358 626 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 473 594 IPR016181 -
Seca4g01358 626 MobiDBLite consensus disorder prediction 114 141 - -
Seca4g01358 626 SUPERFAMILY FYVE/PHD zinc finger 296 360 IPR011011 -
Seca4g01358 626 Pfam Tify domain binding domain 239 289 IPR032308 -
Seca4g01358 626 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 471 617 IPR000182 GO:0016747
Seca4g01358 626 PANTHER PHD FINGER PROTEIN 12 17 621 IPR042163 GO:0003714|GO:0045892
Seca4g01358 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 350 IPR013083 -
Seca4g01358 626 CDD NAT_SF 511 571 - -
Seca4g01358 626 MobiDBLite consensus disorder prediction 94 176 - -
Seca4g01358 626 Pfam PHD-finger 309 351 IPR019787 -
Seca4g01358 626 Gene3D - 490 601 - -
Seca4g01358 626 Pfam Acetyltransferase (GNAT) family 496 587 IPR000182 GO:0016747
Seca4g01358 626 ProSiteProfiles Zinc finger PHD-type profile. 307 352 IPR019787 -
Seca4g01358 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 414 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01358 Seca-Chr4 21971630 21973510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01358 41 564 PHD Transcription Factor Family AT5G58610 35.798 5.17e-104 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g01358 Acetyltransf_1 1.9e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01358 - - aprc:113866262 620.542