Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01341 ATGCTATCTAAAGGGACAAGAGAAGGGGATGAGAAGCTTGGAGCAAGCTTGAAAAGTGGTGTCAAATTGGATCTGAAGATGTTGATTGAGGAGCTGGAATCAATTGATGTGCCCTCAGTTTTTATCTGCCCAATTTCTCTTGAGCCAATGCGAGACCCTGTGACCCTTTGCACAGGTCAAACCTATGACAGGGCCAATATTCTTACATGGTTCTCTCTAGGTCACAATACTTGTCCCACAACAATGCAGGAGCTTTGGGATGATTCAATCACCCCCAACAGGATTCTCAACCAGTTCATTCTTAACTGGTTCTCTCAGAAATACTTAGCCATGAAAAAGAAGCTAGAGGATGTGCAAGGAAGAGCCTTGGAGCTCTTGGACAAGCTCAAGAAGGTAAAGGGTCAAGCTAGAGTTCAAGCTCTTAAGGAACTTCACTACCTTGTTGATTCACATGCATCTACCAGGAAGACAGTTGCAGAAAAAGGTGGACTTTCTTTAATTTTTTCTTTCTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCTGAAGTCATTGGGATTCTTGTGAATTTGGATTTGAGTTCTGAGTTGAAGAAAAATCTGATGCATCCAGCCAAGGTATCTTTGTTGGTGGATATTATGAATGAGGGAACCATTCAGACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGCTGATGGAAGGGAATGGGTCAGAGAGTGAGACCCAAGTTGTGTCAAGCTTGAGTCTTTTGGTTGGATTGTTAAGACTAATAAGGGATCAGAAGCACCCAAATGGGGTCCTAACTGGACTCATATTGCTCAAAATTATATGTTCTCATGAATCAGTTAGAAGCTCGGTTGTTAGCATTGGAACTGTGGCTCAATTGATAGAACTTTTGCCTATTTTGAACAATGAGTGTTTAGAGATAGCACTACATATTCTTGAGGTGTTGTCAACCCTTCCAGAAGGAAGAGTGGCTTTAAAAGAATGTCCAAACATTATACCCAATGTAGTCAAGTTGTTGATGAGAGTCTCAGAGAGTTGCACACAATTTGCATTGTCAATATTGTGGGCTATCTACAAACTTGCCCCAAAAGAATGTGCTTCTAAGGCAGTGGAGGCAGGGTTGGCGGTGAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGAAATCTGCTGAGTTTTTAAAAATGTGCAGTCTTGATTACTCTACTAGTATCTTGATTTCTAAGTGTATGCTTACTACAACAATACAATGA 1275 0.4118 MLSKGTREGDEKLGASLKSGVKLDLKMLIEELESIDVPSVFICPISLEPMRDPVTLCTGQTYDRANILTWFSLGHNTCPTTMQELWDDSITPNRILNQFILNWFSQKYLAMKKKLEDVQGRALELLDKLKKVKGQARVQALKELHYLVDSHASTRKTVAEKGGLSLIFSFLGPFTSHAVGSEVIGILVNLDLSSELKKNLMHPAKVSLLVDIMNEGTIQTKMNCAKLIEMLLMEGNGSESETQVVSSLSLLVGLLRLIRDQKHPNGVLTGLILLKIICSHESVRSSVVSIGTVAQLIELLPILNNECLEIALHILEVLSTLPEGRVALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPKECASKAVEAGLAVKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSTSILISKCMLTTTIQ. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01341 424 Coils Coil 115 135 - -
Seca4g01341 424 ProSiteProfiles U-box domain profile. 36 110 IPR003613 GO:0004842|GO:0016567
Seca4g01341 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 110 IPR013083 -
Seca4g01341 424 CDD RING-Ubox_PUB 38 88 IPR045210 -
Seca4g01341 424 SMART Ubox_2 40 103 IPR003613 GO:0004842|GO:0016567
Seca4g01341 424 Pfam U-box domain 37 107 IPR003613 GO:0004842|GO:0016567
Seca4g01341 424 PANTHER WDSAM1 PROTEIN 31 411 IPR045185 GO:0061630
Seca4g01341 424 SUPERFAMILY RING/U-box 31 107 - -
Seca4g01341 424 Gene3D - 111 409 IPR011989 -
Seca4g01341 424 SUPERFAMILY ARM repeat 132 407 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01341 Seca-Chr4 21740095 21741369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01341 22 424 U-box Gene Family AT3G49810 63.772 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01341 - - gmx:100808281 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01341 4 21740095 21741369 Seca4g01341 4 21740095 21741369 ECH