Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01317 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTTGTAGGGGGCATTTCACGGGACACCACCGAAGATATTCTCAAGCACCACTTCGCCAAGTACGGCGCCGTTTTGGATTCCACGATTTCTGTAGACCGCAGCACCCGAAGCCCTAGAGGTTTTGGCTTCGTTACCTTCTCTGATCTTGCTGCAGCTGACAGAGCCCTTCAAGACACCCATGTTATACTCGGAAGAACGGTAGAAGTGAAAAAAGCAATACCAAGAAGTGAACAGCAACACCAAAACCAATTACAGAATAGAGGAGGAAGTAACTATAGTAGTTATGACTGTAGCAGTGACCAAATTAGGACTAAAAAGATTTTTGTAGGAGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGAAATACTTTGAGAGGTTTGGTCGAATAACAGATGTAGTGGTGATGCAGGACAGTGTAACTCACAGGCCGAGGGGGTTTGGGTTCATCACTTTTGATTCAGAAGAATCTGTGCAAAACGTTATGGTGAAAAATTTCCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACTCTGGATATGATGGTTTTAATAAATTAAGATATAGGAGTGAAAGAGGAGGAGCTACTAAAAGTTTTTCTCATTATAGTCCTAGAAACGTGCTCCCTGGCTTTGCTCCTTTGCCTTGGTATAGTAGTGATGGAGTATATCCATATGGATCTAACACCTACGGTTGCTGGTACCCTATGGGTGGGTATGGGGGGAATGGATATGCAGTTCCATCTGATGCTTATAGGAACTTCTGGTATGGGCACATGATAGCCAGTCCTCAGGTGCCTTATGCTAATGCTTCGCCGAGTGTTGCATATGTGGGTGGTAGGGTTGGAATGGTAGGTAGTGGTGCTGGGACTTGGGGATACAATGGCATTCTTGGGTCTGCAACGAATTTGAAATTTGAACAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGACACCACCTCATGGTGTAAAGCAGGATGTTGACTCTTCAAGTTTGAAAGTAAGCAATGGTGAAATTTCTAGTTAA 1095 0.4402 MNLKMDSDRAKLFVGGISRDTTEDILKHHFAKYGAVLDSTISVDRSTRSPRGFGFVTFSDLAAADRALQDTHVILGRTVEVKKAIPRSEQQHQNQLQNRGGSNYSSYDCSSDQIRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKNFHDLNGRQVEVKRAVPKEGNSGYDGFNKLRYRSERGGATKSFSHYSPRNVLPGFAPLPWYSSDGVYPYGSNTYGCWYPMGGYGGNGYAVPSDAYRNFWYGHMIASPQVPYANASPSVAYVGGRVGMVGSGAGTWGYNGILGSATNLKFEQPFNANGFVPGNVTPPHGVKQDVDSSSLKVSNGEISS. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01317 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Seca4g01317 364 Gene3D - 115 202 IPR012677 -
Seca4g01317 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Seca4g01317 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Seca4g01317 364 Gene3D - 2 114 IPR012677 -
Seca4g01317 364 MobiDBLite consensus disorder prediction 86 108 - -
Seca4g01317 364 MobiDBLite consensus disorder prediction 346 364 - -
Seca4g01317 364 SMART rrm1_1 118 190 IPR000504 GO:0003723
Seca4g01317 364 SMART rrm1_1 11 82 IPR000504 GO:0003723
Seca4g01317 364 MobiDBLite consensus disorder prediction 337 364 - -
Seca4g01317 364 MobiDBLite consensus disorder prediction 88 108 - -
Seca4g01317 364 FunFam RNA-binding protein 1 113 203 - -
Seca4g01317 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Seca4g01317 364 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Seca4g01317 364 SUPERFAMILY RNA-binding domain, RBD 110 211 IPR035979 GO:0003676
Seca4g01317 364 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 296 - -
Seca4g01317 364 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01317 Seca-Chr4 20894661 20896771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01317 12 256 Eukaryotic Initiation Factors Gene Family AT2G36660 25.097 2.59e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01317 K14411 - gmx:100816822 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01317 4 20894661 20896771 Seca4g01317 4 20894661 20896771 ECH