Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01316 ATGAAGTCCATGAATGATAGTAACACTGATGATAGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGTACCATCATCAACAAACTCAGGCTTCTGCGGCTGGTTCTGTTTCTAACACTGTTCCGACAACCTTCTACTTGTCCCCTTCTCACATGGCTAACTCTGGTATCTGTTATGGTGTTGGGGAAAATGGTAACGTTCATTCTCCTTTGACTGTAATGCCTCTCAAGTCAGATGGGTCACTTTGTATCATGGAAGCTCTCAGTAGATCACAAACACAAGTGATGGTGCCTACTTCATCTCCCAAACTGGAGGACTTCCTTGGTGGTGCAACTATGGGAACTCACCAATATGGAAGCCATGAAAGAGAAGCAATGGCTCTGAGCTTAGACAGCATCTATTACAATAGCCAAAATGCAGATCCTCAAGCCAACAGAGACCATTCTCTGGGGCTTCTTTCAGAACCCTTCAGGCAACAAGGCCAAATGAATGTCCAATCACATCCATATTATTCAGGACTTGCTTGTCATGGAATATATCAAGCCCCATTAGAGGAAGAAACCAATAAGGAAACACATGTTACAGTTTGCAGCTCCCAAATGCCTCAAATGGCATCAGAAGAAGGCATTGCTTGCTTGAAAAACTGGGTGCCACAAAGAGAGTATTCTACTCAGCAAGCTCTGGAGCAGCAAATGAACTGTAGTAACATGGGGAATGACCGTGGAGCTGCTGCTACTGTTGGTACTACTGTAGGGTGTGGTGAGTTGCAGTCCCTAAGCTTATCAATGAGTCCTGGTTCACAATCTAGCTGTGTCACAGCTCCTAGGCAGATCTCACCTTCTGGAACAGACTCAGTGGCTATTGATTGCAAAAAGAGAGGAGCTGCTAAGCTGGGACAGAAGCAGCCAGTGCATAGGAAATCTATTGACACATTTGGACAGAGAACTTCACAGTATAGGGGTGTGACAAGACATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAAGAAGGACAGACCAGGAAAGGAAGACAAGTGAAATTAGGGGGTTATGATATGGAAGAGAAAGCAGCAAGAGCCTATGATCTTGCAGCACTTAAGTACTGGGGACCTTCAACTCATATAAACTTCCCGTTGGAAAATTACCAAACTCAACTTGAAGAAATGAAGAACATGACCAGGCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATGTACAGAGGGGTGACAAGGTTCACTTTTTTTTTAATACTATGCAGACACCACCAACATGGCAGATGGCAAGCAAGAATAGGCAGAGTTGCTGGAAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTCCGTGGAGTAAATGCAGTCACTAATTTTGACATATCAAGATATGATGTTGAAAGGATCATGGCCAGCAATACTCTGCTAGCTGGGGAGCTGGCAAGGAGAAACAAAGATAGTGATCCAAGAACTGAAGCCATTGACTATAACAATAGTGTATCAAGCCAGAACAATGTGGAAGCAGTTCAAGCTAGAAACAACAATGAAAATGACACAGACTGGAAGATGGTTTTGTATCATAATCCACAACAACAATCAAATAGCTGTGACCAAAAAATCATGAACTGTGGGAATTATAGAAACTCTGCTTTCTCTATGGCCCTACAAGACCTTATTGGGATTGAGCTAGATGAGTCTAGCAAGGTTGGGACTCATTTTTCAAACCCATCCTCTCTAGTGACCAGTTTAAGCAGTTCAAGAGAAGCTAGCCCTGAGAAAACAGGTCCTTCACTACTCTTTCCAAAGCCACCAATGGAAACAAAAATTGTCAACCCAATTGCTAGTGGTGTTACTTCTTGGTTTCCATCACCAACAATGAGGCCAGCTGCTGCTATCAATTTGTCTCACTTGCCAGTTTTTGCTGCTTGGAATGATACCTAG 2040 0.4328 MKSMNDSNTDDRNNHNWLGFSLSPHMKMEYHHQQTQASAAGSVSNTVPTTFYLSPSHMANSGICYGVGENGNVHSPLTVMPLKSDGSLCIMEALSRSQTQVMVPTSSPKLEDFLGGATMGTHQYGSHEREAMALSLDSIYYNSQNADPQANRDHSLGLLSEPFRQQGQMNVQSHPYYSGLACHGIYQAPLEEETNKETHVTVCSSQMPQMASEEGIACLKNWVPQREYSTQQALEQQMNCSNMGNDRGAAATVGTTVGCGELQSLSLSMSPGSQSSCVTAPRQISPSGTDSVAIDCKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVKLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRFTFFLILCRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDSDPRTEAIDYNNSVSSQNNVEAVQARNNNENDTDWKMVLYHNPQQQSNSCDQKIMNCGNYRNSAFSMALQDLIGIELDESSKVGTHFSNPSSLVTSLSSSREASPEKTGPSLLFPKPPMETKIVNPIASGVTSWFPSPTMRPAAAINLSHLPVFAAWNDT. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01316 679 ProSiteProfiles AP2/ERF domain profile. 324 390 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 Gene3D AP2/ERF domain 426 495 IPR036955 GO:0003700|GO:0006355
Seca4g01316 679 Gene3D AP2/ERF domain 323 392 IPR036955 GO:0003700|GO:0006355
Seca4g01316 679 ProSiteProfiles AP2/ERF domain profile. 426 493 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 SUPERFAMILY DNA-binding domain 323 392 IPR016177 GO:0003677
Seca4g01316 679 PRINTS Ethylene responsive element binding protein signature 372 392 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 PRINTS Ethylene responsive element binding protein signature 325 336 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 Pfam AP2 domain 324 382 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 Pfam AP2 domain 441 485 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 SUPERFAMILY DNA-binding domain 441 495 IPR016177 GO:0003677
Seca4g01316 679 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 567 - -
Seca4g01316 679 CDD AP2 323 390 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 CDD AP2 425 495 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 SMART rav1_2 426 499 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 SMART rav1_2 324 396 IPR001471 GO:0003700|GO:0006355
Seca4g01316 679 FunFam AP2-like ethylene-responsive transcription factor ANT 323 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01316 Seca-Chr4 20864447 20867753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01316 225 520 AP2-EREBP Transcription Factor Family AT4G37750 67.683 1.87e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca4g01316 AP2 9.5e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01316 K09285 - gmx:100787223 1024.23