Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01305 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCACCAGAAGAAGATTCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGTGGTAACTGGATCGCTTTGCCCCAAAAAATCGGTCTTAAGCGATGTGGTAAGAGTTGCCGCCTTCGGTGGCTAAACTATCTTCGCCCTAATATCAAGCATGGAGGTTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGATGGTCGGTTATTGCAGCACAATTGCCAGGGAGAACTGATAATGATATAAAGAATTACTGGAACACAAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGTAAGGAACAACAAGCACGTAACAAAAGCAATAGAGGAGGGAATGGGGATTCTTCATCTTTGGTTCCTCCAGAGAATATTATTAGTCAACAACAACAACAAGAGGCGTATTGGCCTCAGATGCCTGTGGTGCCGCCTTTGGCTTATACAACAAACCAATTAGCACTTCCTCCTCCTCCGAGTTTCAACGACCAAGATTGTATTAGGAAATTGTTAATCAAGCTTGGAGGAAGATTCTCTGATGATAATTATTATCAGCCTATCCTTGATGGTTTGAACAATAATCTTCAATTCCATGATGGTCATGATCTTCTTCCCTCAACACAACAAATTGATCATCATCATTATGATATTGGATCTTCTGGCAACAACAACCAAGTACAATTCTCTCAGACTCATGATCAGTATTGTGCTGCTGTTGAAGGGGCAAGAGAAACTGAAGGTAGTTTCACAGCAGCATTAATAGGGGAGATGGCTACTTCAAGTGATTATTCACAGAGATTAAGTGGGTTGGAGTTTTTGTATGGAGAGGACATGATTAGTGATAATAAGATTACAGGTACAAGCACTAGTCCTATTTGTGGCCAAACTGGTGCTAACTGGGGTGAGAGCAGTGCTCTGATATATCCTCCTCCTCATCCTATTGTTGCTTCCAATTACCAGCAGATCAGTGTGAAGCAAGAGATGCCACAACAAGAATGTGTATTTCAAATTTGTAGCAAATTAAATTAA 1095 0.4155 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARNKSNRGGNGDSSSLVPPENIISQQQQQEAYWPQMPVVPPLAYTTNQLALPPPPSFNDQDCIRKLLIKLGGRFSDDNYYQPILDGLNNNLQFHDGHDLLPSTQQIDHHHYDIGSSGNNNQVQFSQTHDQYCAAVEGARETEGSFTAALIGEMATSSDYSQRLSGLEFLYGEDMISDNKITGTSTSPICGQTGANWGESSALIYPPPHPIVASNYQQISVKQEMPQQECVFQICSKLN. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01305 364 MobiDBLite consensus disorder prediction 130 144 - -
Seca4g01305 364 Gene3D - 7 68 - -
Seca4g01305 364 CDD SANT 71 113 IPR001005 -
Seca4g01305 364 Gene3D - 69 137 - -
Seca4g01305 364 PANTHER OS09G0431300 PROTEIN 1 274 - -
Seca4g01305 364 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca4g01305 364 SMART sant 67 115 IPR001005 -
Seca4g01305 364 SMART sant 13 64 IPR001005 -
Seca4g01305 364 MobiDBLite consensus disorder prediction 119 144 - -
Seca4g01305 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca4g01305 364 CDD SANT 16 62 IPR001005 -
Seca4g01305 364 FunFam Transcription factor RAX3 70 139 - -
Seca4g01305 364 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca4g01305 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca4g01305 364 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca4g01305 364 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca4g01305 364 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca4g01305 364 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01305 Seca-Chr4 20613090 20614890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01305 1 330 MYB Transcription Factor Family AT3G49690 43.895 1.73e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g01305 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01305 K09422 - gmx:778079 447.973