Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01299 ATGGGTTTTGATATCTCAAACTCAAACCCAGGCCTTCTTCGACTCGGTCTTGGTCTTGGCCTCCGCGAGAATTGCATGAAGACCGATGAACCCAAGCAGCAGAGGAATAATAAGAAAAAGGAAGAGGATCATCATCATCATCATCCATGTAATAATAAGGCATATCCTTCTCTTACATTAGGACTCCCTCATGATCATCATCAACTAGCTGTGGCTACAAAGACTGATCAATCGGATGATCAGTTTTTTCATCCACACGCTATATCTTCTCCAAGCGCTGTTTCTTCATTCTCCAACTCTTCTGGTATCAAGAGGGAGAGAGATCAGTTCTCAGGAGAAGATGAACTACTTGAGGTTGAGGTAGAAGGAGGGAAGATTTCATCAACGGTTGATGAAAATGGTAATCCCAAAAAGAAACTCAGGCTCACCAAAGATCAATCCGCTGTCTTAGAGGATAGCTTCAAACAACATTCTACTCTCAATCCGAAACAAAAGCAAGAATTGTCAAGGAAGCTGAATCTGCGGGAGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCCAGGTAA 570 0.4316 MGFDISNSNPGLLRLGLGLGLRENCMKTDEPKQQRNNKKKEEDHHHHHPCNNKAYPSLTLGLPHDHHQLAVATKTDQSDDQFFHPHAISSPSAVSSFSNSSGIKRERDQFSGEDELLEVEVEGGKISSTVDENGNPKKKLRLTKDQSAVLEDSFKQHSTLNPKQKQELSRKLNLRERQVEVWFQNRRAR. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01299 189 Gene3D - 143 189 - -
Seca4g01299 189 SMART HOX_1 135 189 IPR001356 GO:0003677
Seca4g01299 189 CDD homeodomain 136 189 IPR001356 GO:0003677
Seca4g01299 189 MobiDBLite consensus disorder prediction 84 107 - -
Seca4g01299 189 MobiDBLite consensus disorder prediction 28 52 - -
Seca4g01299 189 SUPERFAMILY Homeodomain-like 130 189 IPR009057 -
Seca4g01299 189 MobiDBLite consensus disorder prediction 28 50 - -
Seca4g01299 189 ProSiteProfiles 'Homeobox' domain profile. 133 189 IPR001356 GO:0003677
Seca4g01299 189 Pfam Homeodomain 137 189 IPR001356 GO:0003677
Seca4g01299 189 MobiDBLite consensus disorder prediction 84 105 - -
Seca4g01299 189 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01299 Seca-Chr4 20526291 20527825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01299 131 189 Homeobox Transcription Factor Family AT5G06710 79.661 9.92e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca4g01299 Homeodomain 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01299 K09338 - gmx:100790927 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01299 4 20526291 20527825 Seca4g01299 4 20526291 20527825 ECH