Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01297 ATGGAGGAATACACTAATAACAATCACTTAAGTCCAACTCCAACGGCAAATTTGTTATACTCTTCCGCTGGTGGTTCAAGCATAGGAAACCGCCATCTTCATGTTCCCATCAACACCTTTCATCTTCAATCCGGTTCTGGATCGGATCACTGCTTTCAATTCTCAGTGAAAACCGAGTCCAACAGCAATAACTCACCGATTTTCCACCATCCTTTAATGAGAGGAAATCTTCATCACCACGCGCTGCAAGAAGGAGGAAACCAACAGAGCTCTAATGAAGTTGAAGCCATAAAAGCCAAAATTATTGCTCATCCTCAATACTCCAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTTGGAGCGCCGCCTGAAGTGGCGGCGCGTTTGGCTGAGGTTGGACAGGATTTTGAAGCGCGGCAGCGATCTACGGTTAGTTCAAGGGAAAGTAGCAAGGATCCAGAGCTTGACCAATTTATGGAAGCTTATTATGACATGCTTGTGAAGTACCGTGAGGAATTAACAAGGCCTATACATGAGGCCATGGATTTCATGCGGAGGATAGAAACTCAACTCAACATGCTTTGCAATAATGGACCCCTTCGGATCTTCTCTGGAACAGATGATAAATGTGATGGCGTTGGTTCATCAGAAGAAGATCAAGAGAACAGTGGTGGAGAAACAGAACCGCTTGAGATTGATCCACGAGCTGAAGACCGTGAACTAAAAAACCACTTGCTCAAGAAATATAGCGGTTACTTAAGTAGCCTAAAGCAAGAGCTTTCAAAGAAAAAGAAAAAAGGAAAACTACCTAAAGATGCTAGACAAAAGCTTCTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAAAAGGTGGCGTTGGCTGAATCAACCGGTTTAGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAACTTATGGTGATGGATGGCCTGCATCCACATAACGCATCTCTCTACATGGATGGCCATTACATGACTGATGGTCATTACCGATTTGGGCCATAA 1080 0.4306 MEEYTNNNHLSPTPTANLLYSSAGGSSIGNRHLHVPINTFHLQSGSGSDHCFQFSVKTESNSNNSPIFHHPLMRGNLHHHALQEGGNQQSSNEVEAIKAKIIAHPQYSNLLQVYMDCQKVGAPPEVAARLAEVGQDFEARQRSTVSSRESSKDPELDQFMEAYYDMLVKYREELTRPIHEAMDFMRRIETQLNMLCNNGPLRIFSGTDDKCDGVGSSEEDQENSGGETEPLEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQLMVMDGLHPHNASLYMDGHYMTDGHYRFGP. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01297 359 MobiDBLite consensus disorder prediction 207 231 - -
Seca4g01297 359 SMART HOX_1 263 328 IPR001356 GO:0003677
Seca4g01297 359 Gene3D - 266 328 - -
Seca4g01297 359 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677
Seca4g01297 359 Pfam ELK domain 241 262 IPR005539 GO:0003677
Seca4g01297 359 SUPERFAMILY Homeodomain-like 262 337 IPR009057 -
Seca4g01297 359 SMART ELK_2 241 262 IPR005539 GO:0003677
Seca4g01297 359 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 329 - -
Seca4g01297 359 Pfam KNOX1 domain 96 138 IPR005540 GO:0003677|GO:0005634
Seca4g01297 359 CDD homeodomain 273 325 IPR001356 GO:0003677
Seca4g01297 359 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677|GO:0006355
Seca4g01297 359 ProSitePatterns 'Homeobox' domain signature. 299 322 IPR017970 GO:0000981|GO:0006355
Seca4g01297 359 FunFam Homeobox protein knotted-1-like 2 266 328 - -
Seca4g01297 359 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677
Seca4g01297 359 SMART KNOX2_2 146 197 IPR005541 GO:0003677|GO:0005634
Seca4g01297 359 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Seca4g01297 359 Pfam KNOX2 domain 151 196 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01297 Seca-Chr4 20489848 20494992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01297 55 359 Homeobox Transcription Factor Family AT4G08150 73.377 2.51e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca4g01297 KNOX2 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01297 - - gmx:100807602 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01297 4 20489848 20494992 Seca4g01297 4 20489848 20494992 ECH