Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01292 ATGTTCGAGTTCAAAGTGAGAAACTGCCAGCGTGGCAGGTCACACGACTGGACAGAATGTCCCTACGCACATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAAACACCACTATTCCGGCAACCCCTGCCCTGAGTTTCGCAAAGGAAACTGCACGAAAGGTGATTCCTGCCACTTCGCTCATGGCGTATTCGAATGCTGGCTTCACCCTTCTCGTTACAGAACCCAGCTTTGTAAGGACGGAACCGCTTGTCGCCGGCGAGTGTGTTTCTTCGCTCACACCGCCGAACAACTCCGTCTCTTCGTCACTCATGCTTCGCACGAATCGTTTCTTTCTTCGCCTACTTCGGTTCTTAACTCTTCTCCTCTCTCCGATTCGCCTCCCCGAAACTCACGATACGGCGTCGTACCGTTGAGCGTGGGTGAAATAGTGGGTTCAATGCGTAATGTTCAGATTGAAGAGGGGAATTCGGGTTCAGCCAGGGGAACCAAGATGGGTTGTGTGATTGGGTCTCCGCGAGGAACGCTGTTTGGATGCGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCGGGAAGGGATCTTAGAGCGAGAATCTATGCGAAGCTCAGTAGGGAGAATTCCATGAACGCAGCGTTTTATTCAGCTCCTATACCTGATATTGGATGGGTCTCAGAACTGGTGAAGTGA 690 0.5275 MFEFKVRNCQRGRSHDWTECPYAHPGEKARRRDPRKHHYSGNPCPEFRKGNCTKGDSCHFAHGVFECWLHPSRYRTQLCKDGTACRRRVCFFAHTAEQLRLFVTHASHESFLSSPTSVLNSSPLSDSPPRNSRYGVVPLSVGEIVGSMRNVQIEEGNSGSARGTKMGCVIGSPRGTLFGCEEEPAMERVESGRDLRARIYAKLSRENSMNAAFYSAPIPDIGWVSELVK. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01292 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 42 63 IPR000571 GO:0046872
Seca4g01292 229 Pfam RNA-binding, Nab2-type zinc finger 78 94 - -
Seca4g01292 229 ProSiteProfiles Zinc finger C3H1-type profile. 39 65 IPR000571 GO:0046872
Seca4g01292 229 PANTHER UNKEMPT FAMILY MEMBER 1 229 IPR045234 -
Seca4g01292 229 FunFam Zinc finger CCCH domain-containing protein 39 101 - -
Seca4g01292 229 Gene3D - 39 101 - -
Seca4g01292 229 SMART c3hfinal6 38 64 IPR000571 GO:0046872
Seca4g01292 229 SMART c3hfinal6 73 96 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01292 Seca-Chr4 20398861 20399550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01292 1 100 C2H2 Transcription Factor Family AT5G12850 71.000 9.65e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g01292 zf-CCCH 5.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01292 - K23048 gmx:100786368 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01292 4 20398861 20399550 Seca4g01292 4 20398861 20399550 ECH