Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01263 ATGGACAATGATATGTACATTTCTCCTCTGGACATTTCTGGCCGAGATTCTACTGTAGTAGATGAAATTTCACAACATTCCACCTCAAATCCACTCATTCAGTGCTATTCATTTGACCTTAATGACCAATCCCATCTTATAAATGGAATTTCAATGCTTGCTGGAGAGCAAGGTGAACCTATAAGCAATGTCCAAGCTGATGTTTGCTTCACAAATCCTACAAGTATTGCTGACTCTAGTTCATTAGTTACATCACAAGGAAAGACAATTGTGGAAGATGCCTCAAATTCAATGGAGAACAGTGAGTTTCAAGAGTATTTAGTTGGAGGAATGCCATTCACTCCTGCTTCACTTGCAGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTAGAGAATTCAGCAGCTTTGCCTCCTTCACTCTGCTCCATGGGGGCACTGGAGCCATTCTTCAATCATTGGCAAGGCACATCAAACCCTTTATCTGTAAACTTTGAGGACCATAGTTACAATGAAGTACCTGGGAATGTCAACAAGTTTCCTAAAGCTCCAGAGCTTTATGAAACTGGGTGCCAGCCTTATTCTTCCATAGGAAACCTGGATCCAGATGGATGGACAGAACCAAATGTAGCAAACATGACCAATCATTCTTACCATTCTTCTAAATATAGTAATGAACTTTCTCTAAGTCTTGCAACATCTACAAGCCCAGGACAGTGCTCAGAAGTCAGTTGCTCTGATGTGACCCAATGCATGAATGGAACCATGTCAGGCTTGGAGCAAGCCTCTTGCAGCAGTACTAGGGAACTTTCTATGAGTTTGGGTTGTAACAAATATGTCCAGTTTTCACCAGAAGTATTGAGATCAAGATATCTTGTTGGAATTCAAGACATACTCGCTCAAATTGCAAGATATTCATTTGATAATCTGGAACAGATAAATTGTTCAGCTGCTGGCAATAGAAATAAATCAACCCCTGCTTTCCCACACAAGAGAAGGATACTGGTAAATCACAATGCAGATCCTATGTATGAAGCTCATGCAGAATCTCAATTGCAAAGGCATGCAGCTGAATCAACGAAACCCCAACTGCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCATGCTGCTACAGAGCTGGACCCACAAATACATGCACAATTTGCTCTCCAAACAATTTCTGTTCTATACAAGGACTTGCGAGAGAGGATTAGCAATCATATTCTTGCCATGGGACCAAATTTTAACAACTTTTGCTCAGAAGAGAAAGAATGGTCTGTCGAAACATCATTCCTTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCATCAATTATGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTTTAAGAACTTGGATGTTTCAGAATTTCCTTCATCCATATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAGGAAATGTATAGTGAAATGAATAAAAGAAAGGCATGTCGAAATGAAGAAGGAATGGAGAACAGCCAAGGAAACAGGTTAACTATGAGCAATCAAAGGTTTAATGTCAATTGA 1695 0.4041 MDNDMYISPLDISGRDSTVVDEISQHSTSNPLIQCYSFDLNDQSHLINGISMLAGEQGEPISNVQADVCFTNPTSIADSSSLVTSQGKTIVEDASNSMENSEFQEYLVGGMPFTPASLAAILAARIGLEENLENSAALPPSLCSMGALEPFFNHWQGTSNPLSVNFEDHSYNEVPGNVNKFPKAPELYETGCQPYSSIGNLDPDGWTEPNVANMTNHSYHSSKYSNELSLSLATSTSPGQCSEVSCSDVTQCMNGTMSGLEQASCSSTRELSMSLGCNKYVQFSPEVLRSRYLVGIQDILAQIARYSFDNLEQINCSAAGNRNKSTPAFPHKRRILVNHNADPMYEAHAESQLQRHAAESTKPQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAQFALQTISVLYKDLRERISNHILAMGPNFNNFCSEEKEWSVETSFLQKQWALQQLKRKDHQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYSEMNKRKACRNEEGMENSQGNRLTMSNQRFNVN. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01263 564 SMART prehox3 281 422 IPR006563 -
Seca4g01263 564 Pfam Associated with HOX 287 421 IPR006563 -
Seca4g01263 564 CDD homeodomain 465 526 IPR001356 GO:0003677
Seca4g01263 564 SMART HOX_1 465 529 IPR001356 GO:0003677
Seca4g01263 564 Pfam Homeobox KN domain 482 521 IPR008422 GO:0003677|GO:0006355
Seca4g01263 564 MobiDBLite consensus disorder prediction 545 564 - -
Seca4g01263 564 MobiDBLite consensus disorder prediction 542 564 - -
Seca4g01263 564 SUPERFAMILY Homeodomain-like 467 534 IPR009057 -
Seca4g01263 564 ProSiteProfiles 'Homeobox' domain profile. 462 525 IPR001356 GO:0003677
Seca4g01263 564 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 221 550 - -
Seca4g01263 564 Gene3D - 468 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01263 Seca-Chr4 20042185 20044241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01263 221 538 Homeobox Transcription Factor Family AT4G32980 55.346 2.20e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g01263 POX 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01263 - - gmx:100820354 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01263 4 20042185 20044241 Seca4g01263 4 20042185 20044241 ECH
Seca4g01263 4 20042185 20044241 Seca4g01263 4 20042185 20044241 PCT