Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01257 ATGGCCAGGAAATGCACATATTGTGGAAATTTGGGTCACAATTCAAGAACTTGCAACAACAACAACAGTAGTAGTAGTCTTGGTCACAGACAACAATTAAGGCTATTTGGAGTGCAACTTGATGTTTATTCTTCTTCAACTACTTCATGTTTTGCCACAAAAAGAAGAAGTTTCAGCTCGGATTACCTGCTATCTTCACAGACCTCTTTATCTGTCCCTTCCTCCTCATCCTCTACCTCCTCACCTTCCCTGCTTGGTGGTGCTGCTAATGAAAATTCAGATAGTTACTTAGCTAGTGCCAGCGGCCTCATTTCAACAATCCAAGATAGAAAAAAAGGTGTGCCATGGACAGAGGAAGAGCACCGGATATTTCTTGAAGGGCTTGAGAAGCTGGGGAAAGGTAACTGGAGAGAAATATCTAAAAAATTTGTGACAACAAGAACACCAACCCAGGTGGCAAGTCATGCACAAAAATATTTTCTCCGTCAATCTCAGATTAGCTTCAATAGAAGAAAACGCCGTCCCAGTCTCCTCGATGTGGGAGATGAAAGTAAATCCACATTTTTTAAACCAAGTGAAGGTTTTGGTCTCCCATCAGGAATAAGTAATTTGACTTCAAATGATATCAGCTCCATCAGCCAATTAAGTAATAGCAATCAAAGTTTCCTTTCTCAGTGGCTTTCGAACCCTCATTCAGTGCTGAAATGGCCTAATTGCACTCTTGAGAGTGCAGCCCCTGATTTAGAACTCAAACTTGCAACACCCACGCCATTGGAGTTAACTGGAGGCACGTTCTGA 798 0.4198 MARKCTYCGNLGHNSRTCNNNNSSSSLGHRQQLRLFGVQLDVYSSSTTSCFATKRRSFSSDYLLSSQTSLSVPSSSSSTSSPSLLGGAANENSDSYLASASGLISTIQDRKKGVPWTEEEHRIFLEGLEKLGKGNWREISKKFVTTRTPTQVASHAQKYFLRQSQISFNRRKRRPSLLDVGDESKSTFFKPSEGFGLPSGISNLTSNDISSISQLSNSNQSFLSQWLSNPHSVLKWPNCTLESAAPDLELKLATPTPLELTGGTF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01257 265 SMART sant 112 162 IPR001005 -
Seca4g01257 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 163 IPR006447 GO:0003677
Seca4g01257 265 CDD SANT 115 160 IPR001005 -
Seca4g01257 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
Seca4g01257 265 FunFam transcription factor MYB1R1 114 165 - -
Seca4g01257 265 SUPERFAMILY Homeodomain-like 109 165 IPR009057 -
Seca4g01257 265 ProSiteProfiles SANT domain profile. 116 164 IPR017884 -
Seca4g01257 265 PANTHER TRANSCRIPTION FACTOR KUA1 3 201 - -
Seca4g01257 265 Gene3D - 116 165 - -
Seca4g01257 265 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Seca4g01257 265 Pfam Myb-like DNA-binding domain 115 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01257 Seca-Chr4 19925806 19927084 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g01257 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01257 - - aprc:113866246 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01257 4 19925806 19927084 Seca4g01257 4 19925806 19927084 ECH