Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01245 ATGAAAGATTTGGGAGTAGTAGATGAAAATATGTCTAATTTGACATCTGCATCAAGTGCTTCTTCTGCTTCTTCTCTCCATCCTCTGCACTCTTCCACTTCAACAATTCAGGAACCACAACCTAAAAAGAAGAGAAATCTTCGAGGACATCCAGACCCTGAGGCTGAAGTGATAGCCTTGTCTCCAAACACACTCTTGGCAACAAACCGGTTTATTTGTGATATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCATAATTTACCATGGAAGCTGAAGCAGAAAAGTAGCAAAGAGCCGAGGAAAAAGGTGTACGTGTGCCCAGAGCCAACGTGCGTTCACCATGATCCATCAAGGGCACTAGGCGACCTCACTGGAATCAAGAAGCACTTTTGCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAAAAGTGTTCTAAGAAGTACGCGGTTCAATCCGATTGGAAAGCTCACTCCAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGTGGAACCATTTTCTCTGGAAGGGACAGTTTCAGTGCTCATAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTACTAAAGCATTCACAGCAATGAATCCTTTACTATCATCTCACATCCAACAAGTTCCATTAGTTAAAAAGGAACAAGAAATGAATTTAAGACCAGAAATTCCATCATGGTTGTCTTATCCACCACCATTACCGGTTGGAGAAGCTGGCCAATTAGAAAACCCTAACCCTACTATTTTGGGTCCTTGTAATTTTCAACCCATAGCTTCTCCTCATATGTCTGCTACTGCCTTGTTGCAAAAAGCATCGCAAATGCCGCATCACGTGCAAGGACAAGGATCCTATAGCTCCTCTTCAGTTGTTTCTGGATTATTGGATATGCCTTCACGTGAAGAAATAGGGACAGTGCCACAATTTGGTCATCCTCATGTTTTGGCATCATTGTATGGGAATGGGATCATGTGTGAGTTATTGGAAGAAGGTGGTGGTACTAATACAGGAGGAGCTGAAGAAGCATCTTCTTCTCAGCTTATTCATGATATGATGGATGGTTTGGTCAATAATCCTTTTGAGGAGACTGTAAGGGGAATGATGAATAATAATAATAATAACAACTTTGAGGAACAATGGAGAGTTTCAAAGTCAGCAGAAATATCCCATTTTGGTAAAAGCAATTACAATATTGGCGTTGGTGGGGGTGTCAAGGAGGAGACAAGAGATTTTCTGGGTCTTAGAGTATTTCCTCACTTTGTCAATATGTCCAGGTTTGATCATTTAGGTTCTTCTTCTTATGGCAAGCAAAATCACAACCAACCACCTTGGCAAAGTTGA 1374 0.4178 MKDLGVVDENMSNLTSASSASSASSLHPLHSSTSTIQEPQPKKKRNLRGHPDPEAEVIALSPNTLLATNRFICDICNKGFQRDQNLQLHRRGHNLPWKLKQKSSKEPRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSGRDSFSAHRAFCDALAQESTKAFTAMNPLLSSHIQQVPLVKKEQEMNLRPEIPSWLSYPPPLPVGEAGQLENPNPTILGPCNFQPIASPHMSATALLQKASQMPHHVQGQGSYSSSSVVSGLLDMPSREEIGTVPQFGHPHVLASLYGNGIMCELLEEGGGTNTGGAEEASSSQLIHDMMDGLVNNPFEETVRGMMNNNNNNNFEEQWRVSKSAEISHFGKSNYNIGVGGGVKEETRDFLGLRVFPHFVNMSRFDHLGSSSYGKQNHNQPPWQS. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01245 457 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Seca4g01245 457 MobiDBLite consensus disorder prediction 9 40 - -
Seca4g01245 457 Gene3D Classic Zinc Finger 50 118 - -
Seca4g01245 457 MobiDBLite consensus disorder prediction 1 50 - -
Seca4g01245 457 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Seca4g01245 457 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Seca4g01245 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 439 IPR031140 -
Seca4g01245 457 SMART c2h2final6 147 167 IPR013087 -
Seca4g01245 457 SMART c2h2final6 71 93 IPR013087 -
Seca4g01245 457 SMART c2h2final6 112 142 IPR013087 -
Seca4g01245 457 FunFam protein indeterminate-domain 12-like 50 118 - -
Seca4g01245 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Seca4g01245 457 Gene3D Classic Zinc Finger 125 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01245 Seca-Chr4 19693564 19695906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01245 7 286 IDZ Gene Family AT1G55110 53.614 5.15e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g01245 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01245 K25870 - vvi:100257789 435.261