Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01242 ATGAGCGGTGAGGATGATGACCCAGAAAATAGGAGATTGAAATTAAGACAAGAAGCGTTGAATTTGAAACCTTATTCTCGGCTCAGTAACTTCCAACGCGATCTCATGGCTGGGGCGGTGATGGGTGGAATGGTGCACACCATTGTGGCCCCAATTGAAAGGGCCAAGCTATTGTTGCAGACCCAGGAAAGTAACTTGGCTATTATTGCCAGTGGTCGTCGCAAATTCAAGGGCATGTTGGATTGTATATTCCGTACTGTCAGGGAAGAAGGGATTCTCTCTCTGTGGCGAGGCAATGGTAGCAGTGTTCTTCGCTATTATCCTTCCGTCGCACTCAATTTCTCTCTTAAGGATCTTTATAGAAGCATGTTAAGAGGTGGAAACTCTAATAACAATCTTTTCTCTGGTGCATCAGCTAATTTTATTGCTGGGGCTGCAGCTGGTTGTACATCACTTATCTTAGTATACCCTCTTGATATTGCACACACCCGCCTTGCTGCTGACATTGGAAGGACAGAAGTGCGCCAATTCCGAGGAATTTACCATTTCTTGGCCACCATACTCCAAAAGGATGGGGTTCGTGGGATTTACAGGGGCCTTCCTGCATCTCTACAAGGGATGGTGGTACACAGGGGTCTTTATTTTGGAGGCTTTGATACAATGAAAGAAATGTTATCTGAAGATTCAAAACCTGAGTTGGCATTGTGGAAGCGTTGGATGGTAGCTCAGGCAGTCACAACCTCTGCTGGTTTGATATCTTATCCATTAGACACGGTTCGAAGGAGGATGATGATGCAGTCTGGGATGGAACAGCCAGTGTACAATAGCACTTTGGATTGTTGGAAGAAGATCTATAGAACAGAGGGGTTAACTTCATTATACCGTGGGGCAGTTTCAAATATGTTTAGGAGCACAGGGGCTGCAGCTATCTTAGTCTTGTATGATGAAGTTAAGAAATTTATGAACTGGGGAGGATTGTGA 981 0.4485 MSGEDDDPENRRLKLRQEALNLKPYSRLSNFQRDLMAGAVMGGMVHTIVAPIERAKLLLQTQESNLAIIASGRRKFKGMLDCIFRTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRSMLRGGNSNNNLFSGASANFIAGAAAGCTSLILVYPLDIAHTRLAADIGRTEVRQFRGIYHFLATILQKDGVRGIYRGLPASLQGMVVHRGLYFGGFDTMKEMLSEDSKPELALWKRWMVAQAVTTSAGLISYPLDTVRRRMMMQSGMEQPVYNSTLDCWKKIYRTEGLTSLYRGAVSNMFRSTGAAAILVLYDEVKKFMNWGGL. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01242 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 224 IPR018108 -
Seca4g01242 326 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 28 323 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca4g01242 326 Pfam Mitochondrial carrier protein 234 322 IPR018108 -
Seca4g01242 326 Pfam Mitochondrial carrier protein 30 125 IPR018108 -
Seca4g01242 326 Pfam Mitochondrial carrier protein 138 228 IPR018108 -
Seca4g01242 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 320 IPR018108 -
Seca4g01242 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 123 IPR018108 -
Seca4g01242 326 FunFam probable ADP,ATP carrier protein At5g56450 33 323 - -
Seca4g01242 326 Gene3D Mitochondrial carrier domain 33 323 IPR023395 -
Seca4g01242 326 SUPERFAMILY Mitochondrial carrier 29 316 IPR023395 -
Seca4g01242 326 PRINTS Adenine nucleotide translocator signature 238 254 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca4g01242 326 PRINTS Adenine nucleotide translocator signature 76 97 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca4g01242 326 PRINTS Adenine nucleotide translocator signature 109 121 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca4g01242 326 PRINTS Adenine nucleotide translocator signature 31 43 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca4g01242 326 PRINTS Adenine nucleotide translocator signature 135 148 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca4g01242 326 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085
Seca4g01242 326 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Seca4g01242 326 PRINTS Mitochondrial carrier protein signature 98 118 IPR002067 GO:0055085
Seca4g01242 326 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Seca4g01242 326 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Seca4g01242 326 PRINTS Mitochondrial carrier protein signature 150 168 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01242 Seca-Chr4 19642890 19648227 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01242 28 318 Antiporters AT5G13490 40.404 3.11e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01242 K05863 - gmx:100797251 549.28