Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01239 ATGCAAGGGATTAGAGTGAAAGAAGAAGAAACACTAACATGTGCAGTTACTGGTTCTGCTTCAACATCATGTTCATCTTCATCTTCAAGCTCAAGCCTCTCTCCACAACCCATGGAAGGTCTTCACGAGATGGGTCCACCTCCATTTCTCACCAAGACCTTTGATGTAGTGGAAGATCCATCCACCGACTCCATTGTTTCATGGAGCAGAGCTCGCAACAGTTTCGTCGTTTGGGATTCTCACAAATTCTCCACTGCCATTCTACCTCGTTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAATACCTATGGTTTTAGGAAAGTTGATCCAGATCGATGGGAATTTGCAAATGAAGGGTTTTTGGCAGGACAGAGACAGTTGTTGAAGACCATCAAGAGAAGAAGAAACGTGACACAGTCACAGGCTATGCCGCAGCAAGGTGGGGCTTGTATTGAATTGGGTGAGTATGGGCTTGAAGGTGAGCTTGATAGGTTGAGGAGAGACAGGACAGTGTTAATGGCAGAGATTGTGAGGCTGAGGCAGCAACAGAACAATTCAAGGGAGCAATTGTCTTCCATGGAGGCTAGGTTGCTTACCACTGAGAAGAAACATCAACAGATGATGACTTTTCTTGCTAAAGCACTCAGTAATCAAACTTTTATGCAACAATTGGCACAGAGGAATGGTCAGAACAAAGAATTGCAGGGTGTTCAGATCAAGAGAAAGAGAAGACTGACTGCTAGCCCAAGTGTGGAGAATTTGCAGCAAGATCCTTTATCCATGGCAGTGCCAATTGATTCAGTTGTGGACTATCCAAGTGAAGAACAGGAAGGATTGACAAATATTGAGTCTGAGATGGAGACACTTCTCTCAACTGCTTATGATAATGAATCAAGCAGTGAAATCAAAGACCCAGCATCAAGTTCAGTTCCAATTGCTAGTGAGAGTAATTTGGGGTTAGTCAATGAGGCAATATGGGAGGATTTGCTGAATCAAGACTTGGTTGCTGGGAATCCAGATGATGAAGTTGTGATTGGTGATCTTTCTCAAGTTGATGTCCCGGTGGAGGATTTGGTAGCAGAACCAGATGATTGGACTGAGGACTTGCAGAACCTTGTGGATCATATGGGTTATCTTGGATCCAAATCATAG 1164 0.4416 MQGIRVKEEETLTCAVTGSASTSCSSSSSSSSLSPQPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSRARNSFVVWDSHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRQLLKTIKRRRNVTQSQAMPQQGGACIELGEYGLEGELDRLRRDRTVLMAEIVRLRQQQNNSREQLSSMEARLLTTEKKHQQMMTFLAKALSNQTFMQQLAQRNGQNKELQGVQIKRKRRLTASPSVENLQQDPLSMAVPIDSVVDYPSEEQEGLTNIESEMETLLSTAYDNESSSEIKDPASSSVPIASESNLGLVNEAIWEDLLNQDLVAGNPDDEVVIGDLSQVDVPVEDLVAEPDDWTEDLQNLVDHMGYLGSKS. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01239 387 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01239 387 FunFam Heat shock transcription factor 1 42 139 - -
Seca4g01239 387 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01239 387 Gene3D - 42 139 IPR036388 -
Seca4g01239 387 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 278 IPR027725 -
Seca4g01239 387 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Seca4g01239 387 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01239 387 Coils Coil 166 200 - -
Seca4g01239 387 MobiDBLite consensus disorder prediction 19 37 - -
Seca4g01239 387 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01239 387 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01239 387 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca4g01239 387 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Seca4g01239 387 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01239 Seca-Chr4 19599014 19601902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01239 35 386 HSF AT2G26150 52.676 2.44e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca4g01239 HSF_DNA-bind 3.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01239 K09419 - gmx:100794605 526.554