Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01235 ATGGGTGCCTCAGGAAAATGGGTGAAAGCATTAATCGGACTAAAGAAGCCTGAAAAGGATGAACATGGAAAGGAAGGTGGTAAGAGCAAGAAGTGGAGGTTATGGAGAAGTTCTTCAGGGGATATGGGTTCATGGAAGGGTTTCAAAGGAAACAACAAAGCAGCAGCTTCTGAAGGGTCTGAATCTCCTCCACCACCAGCACCAGATGCTTATACTGCTGCAGTGGCTACTGTGGTTCGAGCTCCACCTAAGGATTTTAGACTAGTTAGGCAAGAATGGGCCGCTATAAGGATCCAAACAGCTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCTTTGAAGGGAGTGGTGAGGATTCAAGCTCTTGTGAGGGGTAGACAGGTGAGAAAACAGGCTGCAGTGACATTGAGGTGCATGCAGGCCTTGGTTCGTGTTCAAGCTAGAGTGAGAGCTCGTCGTGTGCGAATGTCCATAGAGGGGCAAGCTGTGCAAGAAATTCTTAACCAGCGACGCACCAAGCTTGAAATTTTGAAGCAAGCAGAGGAAGGGTGGTGTGATAGCAGAGGAACATTGGAAGATGTTAAAGCAAAGATACAAATGAGGCAAGAAGGAGCTTTCAAGAGAGAGAGAGCAATTGCATACTCTCTTACTCAGAAGCAATGCAGGTCAAACCCAAGCACTAATTCAAGAACAAATGCCTCATTTTCCTCCTCTCTCAAGAATCAAGAGATTTACAAAGCTAAATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAACAATCTCAACAGGCTGAAGGCTTAGACAAAACTCCACCTCCAAAGAAATTTGTGGAATCCTTTGTAAGCTCTGATTCAAACCCATGCTTGGTTAGAATCAAGAAGAACAATGTCACAACAAGGATTTCTGCTAGGCCTCCACATGTTGGGCAAGCTACTCGTTCATCCTCAAGTCCAAGTTATGATGAGAGTTCTGCATCATCTTCTATTTGTACATCTACAACACCCATGTCAGGGAATACTTGTGAGGATAGTAGTAACCAACCAAAGCCTAATTACATGAACCTGACTCAGTCAACCAAGGCAAAGCAAAAAGCAAGTAATAGAGCTCAGAGGCAGCAATCCATGGATGAGTTTCAATTTCTCAAGAGGGCATCAGTTTTCTCTAATGGAGACTCTAAAAGCACTGCTGGTTCTGACCCTTCAATCAACTTCTCTAGACCACTTCACCTACCAACTCACTTGGACAAGAGCTCAGTGAGGCCACGGTGA 1296 0.4545 MGASGKWVKALIGLKKPEKDEHGKEGGKSKKWRLWRSSSGDMGSWKGFKGNNKAAASEGSESPPPPAPDAYTAAVATVVRAPPKDFRLVRQEWAAIRIQTAFRAFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQEILNQRRTKLEILKQAEEGWCDSRGTLEDVKAKIQMRQEGAFKRERAIAYSLTQKQCRSNPSTNSRTNASFSSSLKNQEIYKAKWSWLERWMAAKPWESRLMEQSQQAEGLDKTPPPKKFVESFVSSDSNPCLVRIKKNNVTTRISARPPHVGQATRSSSSPSYDESSASSSICTSTTPMSGNTCEDSSNQPKPNYMNLTQSTKAKQKASNRAQRQQSMDEFQFLKRASVFSNGDSKSTAGSDPSINFSRPLHLPTHLDKSSVRPR. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01235 431 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Seca4g01235 431 MobiDBLite consensus disorder prediction 268 289 - -
Seca4g01235 431 MobiDBLite consensus disorder prediction 1 68 - -
Seca4g01235 431 PANTHER IQ-DOMAIN 5-RELATED 1 397 - -
Seca4g01235 431 MobiDBLite consensus disorder prediction 309 431 - -
Seca4g01235 431 MobiDBLite consensus disorder prediction 12 35 - -
Seca4g01235 431 MobiDBLite consensus disorder prediction 309 411 - -
Seca4g01235 431 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Seca4g01235 431 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Seca4g01235 431 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01235 Seca-Chr4 19543210 19546280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01235 1 425 IQD Protein Family AT2G26180 60.780 1.69e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01235 - - gmx:100799714 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01235 4 19543210 19546280 Seca4g01235 4 19543210 19546280 PCT