Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01234 ATGTTTAATTTTATTATAATTGTGGATATAGGATGCAAAGGTGTCAAGGGTGCACAACCTGGTCTAGTTCTCTCATGGGCTCAAAGAGTTAAAATTGTTGTTGGTGCAGCTAGAGGACTTGAATATCTTCATGAAAAGGCAGAGACTCATATTATCCTTCATTACATTAAGTCTAGTAACATAATGCTTTTCGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGCCAAATCAAGCCCCTGATGCAGCAGCACGCACGACTTCATTCTACCTGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAGTAACTTGCTACGGAAGAACGATGAGAAGAAGACAAGAAGAAAGGAGAGAAGAAGAAACCGTCAGAAGCGAGAATGAGGGGAATGCAATTAGGGTTCAACAAATTCCCCTTTAA 423 0.3972 MFNFIIIVDIGCKGVKGAQPGLVLSWAQRVKIVVGAARGLEYLHEKAETHIILHYIKSSNIMLFDDDVAKIADFDLPNQAPDAAARTTSFYLCSWNLWLSCSRVTCYGRTMRRRQEERREEETVRSENEGNAIRVQQIPL. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01234 140 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 9 89 - -
Seca4g01234 140 Gene3D Transferase(Phosphotransferase) domain 1 16 119 - -
Seca4g01234 140 Pfam Protein tyrosine and serine/threonine kinase 24 80 IPR001245 GO:0004672|GO:0006468
Seca4g01234 140 SUPERFAMILY Protein kinase-like (PK-like) 22 86 IPR011009 -
Seca4g01234 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01234 Seca-Chr4 19533871 19534293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01234 24 82 Receptor kinase-like Gene Family AT2G39360 54.237 6.96e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca4g01234 PK_Tyr_Ser-Thr 2.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01234 K13436 - gmx:547595 134.806