Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01223 CGAAAACGAACGGTGCAGGCTAATGACAAATGGAAGGGTTACCTGTGTCCGTTTGTGTCGTCAATATGTCTTTCATCTTCACAGGAGCAACCTTCTGTTTTCCTTTCCTCCTTCCTCTACCCACCTTGTGTAGAACAAACTGCATCTGCCACCGGGAACCGGTGGAACCGGTGGCCGCAGTGTCCAAACGTTAACAAACATCAATGTATCATGTCTGTCCAGCAACCATGTGGTGGTGCCCCACCACAAAATATCACAATGGTCGCTGTGGACAGAGACAAGAACAGTGCTTATGCCTTCCGATGGGCCGTTAATCATCTTGATAATCCTTTCATCATCGCCGTCCATGTCAAGCACAAAAACTATCATAATCAGGGCACAAATGTTTTTCCACCGGACGAAGAAGACGTAGCCCAAATTTTCAGTCCCTTACGCCTAATGTGTAATCGTAAAGTTGTCACGATGAGAGAAGCTGTAGTTGATGATCATGATGTTGTCAAAGGAATTTTAGATTTTGCAAGCAAGAATCCCATACATAGCATTGTCATCGGTGCATCGAACAAGAACCCTTTGACAAGTCTAAAAAAATTTAAAGGCTATCATGATATACCAACAGCAGTGATCAAATCAGCCCCGGAATATTGCTCTGTATACATAATTTCGAAATTGAAGATTGTGTCAGCTCGATCAGCAATTCGATCAATGGCAAAACAGCTAGTCCCCCCAAAACAGCATCAACCTGTTCAGGCATTCCCACCTAGTGAATCAGAAAGTGGTGGAGGATCAGTAAGGGGATATCCACCTAGAAGTGGGGGTACTACAGAGGAAGGATCAGAATCAAGGTCTTTTGACAGCATTTATCCAGTAAGAACACAGGGACAGGGACAGGGACGGGAGAGGCCAAGGAGTGCGGGAAGTAACCAGTCATTGGACAACATTAATCTACCTGGTCGTGCACGACATTGGTCAATGGATGAGCGGGAGATTTTAGGACTTGTGCCTATTGATGTAACTAAACAAGATATGGATGTAATTGTTACATCTGATACCCACGGGACATCAACTTCAAGAGACCTTGAAGCTGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAATCAGGCTGAACAGATTCGTCGATGGAAAGTGGAAGAGGAACGTAAGGTTGAGGAAGTTAGGATGTCTCAAGAGGCAGCTCTTGCAATTGCAGAAAAGGAGAAGGCAAAAGCCAGAGCTGCATTGGAAGCAGCTGAGGAATCCAGGAGGAAGGCTGAACAGGAAGCACAGAGAAGAAAGGAGGCAGAGATGAAAGCCAGAAGAGAGTCAGAAGAGAAGGATCGAGTATTAACTGCTTTGGCTCAAAATGATTATCGATATAGAAAATACACCATAGAGGAGATTGAAGCAGCTACTGAAAAGTTCTCCCCATCAAAGAAAGTAGGTGAAGGTGGATATGGACCTGTGTACAAAGGCCAACTTGATCACACCCTAGTTGCAATCAAAATTTTAAATCCTGAGGCTTCTCAGGGCAGGAAGCAGTTCCAACAAGAGGTTGAGGTACTAAGCTGCATTAGACATCCGAATATGGTGCTCCTCCTTGGAGCCTGTCCTGAGCATGGATGCTTGGTGTATGAATATATGGATAATGGAAGCTTAGAAGATAGATTATTTCGGAAAAATAACAGCAGGCCTATTTCATGGAGGAAACGGTTCCAAATAGCTGCTGAGATTGCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAACCCATTGTGCACCGAGACCTTAAACCAGCTAACATTCTGTTGGACAGGAACCACGTGAGTAAAATCAGCGATGTTGGTCTGGCAAGACTAGTTCCCCCTTCTGTAGCTGATACTGTCACACAATATTACATGACTTCAGCTGCTGGAACCTTTTGTTATATTGATCCTGAGTATCAACAAACAGGAATATTAACACCAAAATCAGATATATATTCGTTGGGGATAATGCTTCTGCAGATAGTCACAGCCAAGCCTCCCATGGGTCTTGCTCACCAAGTCAGGAAGGCCGTTGAAAAGGGCAGGCTTTCAGAGATTCTTGACCCTGTGGTGACTGATTGGCCAGTTGAAGAAGCTCTATCTTTTGCCAAATTAGCAGTGAGCTGTTCAGAACTCAGCAAGAAGGACAGGCCAGATCTTGCAACAGTTGTATTACCAGAGCTTAGTCGGTTAAGAGACTTGGGATGCTCTTTACCCATCAATGAAGTTACCTCGCGCCCTCCCACACCTACCTGA 2331 0.4474 RKRTVQANDKWKGYLCPFVSSICLSSSQEQPSVFLSSFLYPPCVEQTASATGNRWNRWPQCPNVNKHQCIMSVQQPCGGAPPQNITMVAVDRDKNSAYAFRWAVNHLDNPFIIAVHVKHKNYHNQGTNVFPPDEEDVAQIFSPLRLMCNRKVVTMREAVVDDHDVVKGILDFASKNPIHSIVIGASNKNPLTSLKKFKGYHDIPTAVIKSAPEYCSVYIISKLKIVSARSAIRSMAKQLVPPKQHQPVQAFPPSESESGGGSVRGYPPRSGGTTEEGSESRSFDSIYPVRTQGQGQGRERPRSAGSNQSLDNINLPGRARHWSMDEREILGLVPIDVTKQDMDVIVTSDTHGTSTSRDLEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRRWKVEEERKVEEVRMSQEAALAIAEKEKAKARAALEAAEESRRKAEQEAQRRKEAEMKARRESEEKDRVLTALAQNDYRYRKYTIEEIEAATEKFSPSKKVGEGGYGPVYKGQLDHTLVAIKILNPEASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKNNSRPISWRKRFQIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNHVSKISDVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQQTGILTPKSDIYSLGIMLLQIVTAKPPMGLAHQVRKAVEKGRLSEILDPVVTDWPVEEALSFAKLAVSCSELSKKDRPDLATVVLPELSRLRDLGCSLPINEVTSRPPTPT. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01223 776 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 87 194 - -
Seca4g01223 776 SMART serkin_6 490 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01223 776 Gene3D Phosphorylase Kinase; domain 1 460 562 - -
Seca4g01223 776 MobiDBLite consensus disorder prediction 433 458 - -
Seca4g01223 776 PANTHER OS02G0152300 PROTEIN 86 772 - -
Seca4g01223 776 FunFam U-box domain-containing protein 51 563 762 - -
Seca4g01223 776 SUPERFAMILY Protein kinase-like (PK-like) 473 749 IPR011009 -
Seca4g01223 776 Gene3D Transferase(Phosphotransferase) domain 1 563 759 - -
Seca4g01223 776 Pfam Universal stress protein family 87 192 IPR006016 -
Seca4g01223 776 Coils Coil 409 461 - -
Seca4g01223 776 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 463 562 - -
Seca4g01223 776 Pfam Protein kinase domain 492 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01223 776 Gene3D HUPs 80 216 IPR014729 -
Seca4g01223 776 ProSiteProfiles Protein kinase domain profile. 490 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01223 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Seca4g01223 776 MobiDBLite consensus disorder prediction 273 314 - -
Seca4g01223 776 MobiDBLite consensus disorder prediction 238 319 - -
Seca4g01223 776 CDD STKc_IRAK 496 749 - -
Seca4g01223 776 CDD STK_N 88 222 - -
Seca4g01223 776 Coils Coil 356 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01223 Seca-Chr4 19402313 19407030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01223 155 760 Receptor kinase-like Gene Family AT5G12000 59.135 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca4g01223 Pkinase 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01223 - - gmx:100798861 946.421