Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01218 ATGGAGGATCTCGAGGAGGAAGAGAACGGTGGAGCAGAGGAGGTGTTAGGGTCAAGCTTGACCATGGAGAAGGTTGCTGCAGCTAAGAAGTTCATCGAGAATCATTATAGGGCTCAGAGGAAGAACCTCCAAGAACGGAAAGAGAGGCGTTGGGTTTTAGAAAGGAAATTAGCTTCTTCAGATGTGCCAAATGAGGAGCGAATCAACCTCATCAAAGATTTAGAGAGGAAGGAAACTGAATATATGCGATTGAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTGACTATCATTGGAAGAGGGGCTTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAAGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCCGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGACTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATGTTATGACTCTGCTGATAAGGGAAGACACCTTAAGTGAAGATGTTGCTAGGTTTTACATTGCACAGAGTGTTATGGCCATAGAGTCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGCCTCTGTAAGCCTATCGACTGTATTACCCTGTCTACACTGCATGAAAATCAGACCATGGATGATGAAACTTCGGCAGAGCCAATGGATATCGATGGACGTGTTCCAGATGCGGACAATCGAAGCAGCTGGAGAAGTCCACGGGAACAGCTTCAGCACTGGCAGATGAACAGGAGGAAGTTGTTCACAGAGTTCCTTGTTTCTCATTGCAAGGCATTTTCAACAGTGGGAACACCAGACTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGAATGGAATGTGATTGGTGGTCACTGGGAGCAATATTGTATGAAATGCTGGTTGGTTACCCTCCATTTTACTCTGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAATATTTCCAGAAGACGCCCAGATAACACTTGAGGCTAAGGATCTAATCTACAGATTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCACATGAAATCAAGGCTCATCCTTGGTTCAAGGGTGTACAGTGGGATAAACTTTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGGGAGCTGGATACCCAAAATTTCATGAAATTTGATGAGGTGGATCCACCAGCAGCAGCAAGAACTGGGTCCGGATCCTCAAGAAAGATGCTTCTAACTCCCAAAGATTTGAACTTTGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAAGAAGGGCTTCGTCAATCTTTTGGTGATTCCATGCAAGATTATGCTTCTAAACGGGCAGCTGAGGAAACAGGTTTACCAATGCTTGCATCATCTGGAGATCCCATGTTGCCATAA 1560 0.4282 MEDLEEEENGGAEEVLGSSLTMEKVAAAKKFIENHYRAQRKNLQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLIREDTLSEDVARFYIAQSVMAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCITLSTLHENQTMDDETSAEPMDIDGRVPDADNRSSWRSPREQLQHWQMNRRKLFTEFLVSHCKAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAILYEMLVGYPPFYSDDPITTCRKIVHWRNHLIFPEDAQITLEAKDLIYRLLCDVDHRLGTRGAHEIKAHPWFKGVQWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPAAARTGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSFGDSMQDYASKRAAEETGLPMLASSGDPMLP. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01218 519 ProSiteProfiles Protein kinase domain profile. 94 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01218 519 CDD STKc_NDR_like 92 476 - -
Seca4g01218 519 FunFam Non-specific serine/threonine protein kinase 430 440 - -
Seca4g01218 519 CDD MobB_NDR_LATS-like 28 89 - -
Seca4g01218 519 MobiDBLite consensus disorder prediction 255 279 - -
Seca4g01218 519 FunFam Non-specific serine/threonine protein kinase 178 245 - -
Seca4g01218 519 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 449 - -
Seca4g01218 519 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Seca4g01218 519 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Seca4g01218 519 SUPERFAMILY Protein kinase-like (PK-like) 77 455 IPR011009 -
Seca4g01218 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Seca4g01218 519 MobiDBLite consensus disorder prediction 263 279 - -
Seca4g01218 519 SMART serkin_6 94 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01218 519 MobiDBLite consensus disorder prediction 500 519 - -
Seca4g01218 519 Gene3D Transferase(Phosphotransferase) domain 1 306 429 - -
Seca4g01218 519 Gene3D Transferase(Phosphotransferase) domain 1 178 242 - -
Seca4g01218 519 FunFam Non-specific serine/threonine protein kinase 55 177 - -
Seca4g01218 519 SMART pkinase_C_6 412 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca4g01218 519 Pfam Protein kinase C terminal domain 430 475 IPR017892 GO:0004674|GO:0005524|GO:0006468
Seca4g01218 519 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca4g01218 519 Pfam Protein kinase domain 306 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01218 519 Pfam Protein kinase domain 95 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01218 519 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Seca4g01218 519 Gene3D Phosphorylase Kinase; domain 1 92 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01218 Seca-Chr4 19349367 19358861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01218 1 518 AGC Kinase Gene Family AT4G33080 78.269 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca4g01218 Pkinase 2.9e-43 CL0016