Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01216 ATGGAGGAGATGTCGACCACGGTTGCAGTGCCATTAAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCTTAGCTACTCACATGGATGTATCCAGACTTAAGCTGATGGCAGATGCAGGGTTGTTATCCAATTCTATAACTACAATTTCAACTGAGACTTTTATAGGTTCTGATGAGGATCATAATGGTGGCAGTTTGGAGGATGAAGTTGGTGTTACAGAAGTCACACCGCCGAAACAGGGAAGAGAAGGAGAAATTCCTTTGTTGAATATGATATCCCAAAATATAAACACTTCAGCTGTTGGTGATGGAGTTTTAACCCCAGAAATTGAGGAGGATGATTCTTTATCATTGGAAGGTGATCCAATTATTGATAGCTCTTCTCTTTCAGTAGCTAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCATCATTTCTGAGGTTACTTCAGATTTTGGGACAAGGAGTTCCATAGACATAGAGCAGAGCATCTCTTCTGTCAAAATTGTTGCTAGGTCTGCTGATTTGGATGAGTCAAATATGGAGGTAGATATTATAAGTGAACCCCTTGCTGTAGCAGTGAGCCTTGAAGAAGAAACAGGAATTGGATCTGGCCCAATTCCTACTACAGTCGTTCTTCATCAACTACCTCTTGAAAAAGGGATGGGTGGAACAGTTGGTCGGAGTGTTTTTGAATTGGATTGTACCCCACTTTGGGGATATATATCTATGTGTGGAAAAAGACCTGAGATGGAAGATGCAGTTGCAGCTGTACCTCGGTTGTTGAAAATTCCTATTCAAATGCTAATTGGTGACAGGGTACTTGATGGAATGAACAAGTGTTTCAGTCAGCAGACAATTCATTTCTTTGGAGTCTATGATGGTCATGGTGGCTCTCAGGTGGCAAATTATTGTCGTGATCGTATGCATATGGCCTTGGCTGAGGAAATAGAATTGGTCAAGGAAGGTCTAATGATTGGAAGTAGCAAGGATGATTGTAAAGATCAGTGGAAAAAAGCTTTCACCAATTGTTTTTTGAAGGTTGATGCTGAAGTTGGGGGGAAAGTTAATTGTGAACCTGTTGCCCCAGAAACCGTTGGATCCACTGCCGTTGTTGCTGTTGTCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCAGTTCTGTGTCGTGGCAAAGAACCCATGGCGTTATCTGTTGATCATAAACCAAACCGAGATGATGAATATACAAGAATTGAGGCAGCTGGAGGCAAGGTGATACAATGGAATGGTCATCGAGTTTTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATACCTGAAGCCATGGATTATTCCCGATCCAGAAGTTACATTTCTTCCTCGTACAAAAGATGATGAATGTCTCATTCTGGCCAGTGATGGCTTTTGGGATGTCATGACAAATGAAGAGGCATGTGACCTAGCTCGAAGGCGAATACTTCTCTGGCACAAGAAAAATGGCTTGGCAATGCCCTCTGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCTGCGGAGTACCTATCAAACCGTGCTCTTCAAAAAGGAAGCAAAGATAACATCACTGTGATTGTGGTAGATTTGAAAGCTCAACGAAAATTTAAGAGTAAAACATGA 1659 0.4183 MEEMSTTVAVPLRVGNSVCDKPTLATHMDVSRLKLMADAGLLSNSITTISTETFIGSDEDHNGGSLEDEVGVTEVTPPKQGREGEIPLLNMISQNINTSAVGDGVLTPEIEEDDSLSLEGDPIIDSSSLSVASENSSVCGDEFIISEVTSDFGTRSSIDIEQSISSVKIVARSADLDESNMEVDIISEPLAVAVSLEEETGIGSGPIPTTVVLHQLPLEKGMGGTVGRSVFELDCTPLWGYISMCGKRPEMEDAVAAVPRLLKIPIQMLIGDRVLDGMNKCFSQQTIHFFGVYDGHGGSQVANYCRDRMHMALAEEIELVKEGLMIGSSKDDCKDQWKKAFTNCFLKVDAEVGGKVNCEPVAPETVGSTAVVAVVCSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYTRIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRTKDDECLILASDGFWDVMTNEEACDLARRRILLWHKKNGLAMPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01216 552 PANTHER PROTEIN PHOSPHATASE 179 542 IPR015655 GO:0004722|GO:0006470
Seca4g01216 552 ProSiteProfiles PPM-type phosphatase domain profile. 238 542 IPR001932 -
Seca4g01216 552 Pfam Protein phosphatase 2C 273 535 IPR001932 -
Seca4g01216 552 SUPERFAMILY PP2C-like 234 543 IPR036457 -
Seca4g01216 552 CDD PP2Cc 240 542 IPR001932 -
Seca4g01216 552 ProSitePatterns PPM-type phosphatase domain signature. 289 297 IPR000222 GO:0043169
Seca4g01216 552 SMART PP2C_4 228 540 IPR001932 -
Seca4g01216 552 Gene3D - 225 552 IPR036457 -
Seca4g01216 552 FunFam Protein phosphatase 2C 16 226 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01216 Seca-Chr4 19317431 19322582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01216 1 552 PP2C-type Phosphatase Gene Family AT1G17550 48.940 2.85e-168 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01216 K14497 - gmx:100803321 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01216 4 19317431 19322582 Seca4g01216 4 19317431 19322582 ECH