Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01210 ATGTGCACTTCAATGATCCTTTCTTTTCATATCATCAATGAACCCAAAATGACAGACAAAAATCAAGGACCACCAGATTCACCTGACACCCAATGGCCTTTGGAGCTCTCTGAGTACTTGAAATTTGACAATGATCAATGGCCAGATGATGACCCTGATTCATTTGTTTCTGAGCATGCCCTGAATCAGGACAATCAAACCAATGAAACAGGTGACTTTGGAGGAAGTAGCACTAGCAACCTCGTTGAGGGGTCTTCTAGCAATGTCATAGGAGAAGTTAGCAGTGAACTTGAGAAGAAGGAAGTTAGAGATAGAGTTGCATTCAAAACCAAGTCAGAGATTGAAATACTGGACGATGGGTTCAGGTGGAGGAAGTATGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGAAACTACTACAGGTGTTCAGTGGAGGGGTGTCCAGTAAAAAAAAGAGTTGAGAGAGATAGGGATGATCCAAGGTATGTAATAACAACCTATGAAGGCATCCATACTCACCCAAGTGCTTGA 534 0.4232 MCTSMILSFHIINEPKMTDKNQGPPDSPDTQWPLELSEYLKFDNDQWPDDDPDSFVSEHALNQDNQTNETGDFGGSSTSNLVEGSSSNVIGEVSSELEKKEVRDRVAFKTKSEIEILDDGFRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDRDDPRYVITTYEGIHTHPSA. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01210 177 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 175 IPR044810 GO:0003700
Seca4g01210 177 FunFam WRKY transcription factor 57 103 177 - -
Seca4g01210 177 Gene3D WRKY domain 104 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g01210 177 SMART WRKY_cls 117 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g01210 177 MobiDBLite consensus disorder prediction 46 89 - -
Seca4g01210 177 SUPERFAMILY WRKY DNA-binding domain 110 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g01210 177 ProSiteProfiles WRKY domain profile. 112 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g01210 177 MobiDBLite consensus disorder prediction 58 89 - -
Seca4g01210 177 Pfam WRKY DNA -binding domain 118 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01210 Seca-Chr4 19237522 19239067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01210 18 176 WRKY Transcription Factor Family AT5G26170 50.588 5.50e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g01210 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01210 - - gmx:100808823 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01210 4 19237522 19239067 Seca4g01210 4 19237522 19239067 ECH