Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01201 ATGACAGAGGGAAACCGCTTGATCATAAAGACTGAAATCCATCTTCCTCAAACAATTTCCACATCAGAGACAAAATATCAAAACAAGAATAAATCATCCAGTACTGACAATTCTGATTCTCACAACAACCGCAAGATAGATGGAAGACGATTCATCATTCAGACTCAATGCCATGTTCCTCGAAGACCTCGCTCTTCCCATGCTTCAATTCCATTACCAGAGAGAAAAACTCCCTCTCATGTAAAGAACAACGAAGCAGCCAGTGAGATACAGAACAAGACAGAGGCAAGAAGCTATATCTTAAGGACTCAAAACCATGTTCCTCCAAGAGTTTCAACTTCCAGTGTACCGATTATACTTACTATACCAGCAGTAAATAAATCTCTCTCTGATGAAAAGAAGAAGAAGGCGATTACTGAGAGTTCTCATTCTCGATCATTCCTTGATACTCACAATCACAAACACATGCAGAAAAAGATAGATTGTCTAAGCTCGGTTGGTCAATCCTCAAAATGCTTTTGCGGCATATGCTTTGATTTCAAAACAGAAGCTGGTATGTTCAGAAGAAGTAAGTGTAACCACCCATTCTGTGCTGATTGCATATCCAAGCATGTGGCTACTCAAATACAACAAAATATTCTCAAAGTGAATTGTCCACATCCAAATTGTTCTATAAAATTGAAGCCAGAATATTTGCAAGGCATTTTGCCTAAACAAGTTATTGATCGATGGGAGTGTGCAAGAGTCGAGTCTTCTATTGCTTCCAGGCAAAAGATTTACTGCCCTTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGGTCAGAAGTTGTCACCAGTTCTGAGTGTCCCTCCTGTCACAGGCTATTTTGTGCACAGTGTAAGGTCCCATGGCATGCAGGAATGAGTTGCAAGGAATTCAAAAGGAGTAAAAGTGAAAAGAAGTTGGAGAGTAAGTTTCTGGAGTTGGCCAAAAGTGAAATGTGGCAGAAATGTCCTAAATGCTCTATCTTTGTCCAAAGAAGTAGTGGATGTGAACACATTACCTGCAGGTTATATCACTGA 1065 0.3972 MTEGNRLIIKTEIHLPQTISTSETKYQNKNKSSSTDNSDSHNNRKIDGRRFIIQTQCHVPRRPRSSHASIPLPERKTPSHVKNNEAASEIQNKTEARSYILRTQNHVPPRVSTSSVPIILTIPAVNKSLSDEKKKKAITESSHSRSFLDTHNHKHMQKKIDCLSSVGQSSKCFCGICFDFKTEAGMFRRSKCNHPFCADCISKHVATQIQQNILKVNCPHPNCSIKLKPEYLQGILPKQVIDRWECARVESSIASRQKIYCPFKNCSVLLVNDGSEVVTSSECPSCHRLFCAQCKVPWHAGMSCKEFKRSKSEKKLESKFLELAKSEMWQKCPKCSIFVQRSSGCEHITCRLYH. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01201 354 ProSiteProfiles Zinc finger RING-type profile. 174 219 IPR001841 -
Seca4g01201 354 SUPERFAMILY RING/U-box 256 310 - -
Seca4g01201 354 MobiDBLite consensus disorder prediction 19 86 - -
Seca4g01201 354 SMART ibrneu5 242 304 IPR002867 GO:0008270
Seca4g01201 354 ProSitePatterns Zinc finger RING-type signature. 192 201 IPR017907 -
Seca4g01201 354 SUPERFAMILY RING/U-box 170 251 - -
Seca4g01201 354 Gene3D - 301 352 - -
Seca4g01201 354 FunFam RBR-type E3 ubiquitin transferase 169 255 - -
Seca4g01201 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 255 IPR013083 -
Seca4g01201 354 ProSiteProfiles TRIAD supradomain profile. 170 354 IPR044066 -
Seca4g01201 354 Pfam IBR domain, a half RING-finger domain 244 304 IPR002867 GO:0008270
Seca4g01201 354 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 350 IPR031127 GO:0004842|GO:0016567
Seca4g01201 354 CDD BRcat_RBR_unk 257 307 - -
Seca4g01201 354 SUPERFAMILY RING/U-box 320 350 - -
Seca4g01201 354 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01201 Seca-Chr4 19187350 19188414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01201 174 351 C3H Transcription Factor Family AT2G19610 31.937 1.59e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01201 K11975 - mtr:25490784 266.929