Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01200 ATGAGTTTGAGCACAGCCGAGGATGATTCGGCTTCAGAAATTCACATCCCTGCAGAGATTGATTGGCATATGCTTGACAAGTCCAAGTTTTTCTTCCTTGGCGCCGCCTTATTCTCTGGTGTATCAGCTGCTCTTTATCCCATGGTTGTGTTGAAGACTCGCCAACAGGTTTCTTCTGCACAATTCTCTTGCCTCAACATGTCTTGTGCCATTCTCCGCTATGAAGGGTTCAGAGGGTTTTACAAAGGTTTTGGTACTTCCTTGATGGGAACCATCCCTGCTCGAGCACTTTACATGGGTAGCCTTGAAATCACCAAGAGTAATGTTGGCACTGCTTTTGTTGAATTGGGTTTCTCAGATACCACAGCCACTGCTGTTGCTAGTGCTGCAGCAGGTGTCACTTCTGCTATGGCTGCACAATTAGTTTGGACCCCAATTGATGTTGTGAGCCAAAGACTCATGGTTCAAGGCAGTGGTGGCAGCAAAACTATTCTAGCCAATCTTAACTCTGACAATTACAGGAATGGCCTTGATGCTTTCAGGAAAATTCTCTGTGCTGATGGACCAAGAGGGTTCTATAGAGGATTTGGGATTTCTATACTGACTTATGCACCATCTAATGCTGTTTGGTGGACTTCTTACTCTATGGTCCATAGGTTCATATGGGGTGCTTTTGGTTCTTATATGGGTAAGAGGGATGAGAGTAGTTTGGGGAATGGGTGTGGTTTTAGGCCTGATTCCAAGGCAATTGTGGCTGTTCAAGGGTTGAGTGCGGTTGTGGCTAGTGGGGTATCTGCAATTGTGACCATGCCTCTTGACACAATCAAGACAAGGTTGCAGGTGTTGGATACAGAGGAGAATGGACGAAGGAGGCCGTTAACTTTTGTGCAGACGGTTAGGAATTTGGTGAAGGAAGGTGGCATGCTTGCTTGTTACAGAGGATTGGGGCCAAGATGGGCTTCAATGTCCATGTCTGCAACAACCATGATTACTACTTATGAGTTTCTGAAACGGATGTCCACTAAGAGCCAAGAGAAACTAAATTGA 1047 0.4565 MSLSTAEDDSASEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSAQFSCLNMSCAILRYEGFRGFYKGFGTSLMGTIPARALYMGSLEITKSNVGTAFVELGFSDTTATAVASAAAGVTSAMAAQLVWTPIDVVSQRLMVQGSGGSKTILANLNSDNYRNGLDAFRKILCADGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWGAFGSYMGKRDESSLGNGCGFRPDSKAIVAVQGLSAVVASGVSAIVTMPLDTIKTRLQVLDTEENGRRRPLTFVQTVRNLVKEGGMLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKSQEKLN. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01200 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Seca4g01200 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 345 - -
Seca4g01200 348 Pfam Mitochondrial carrier protein 253 343 IPR018108 -
Seca4g01200 348 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Seca4g01200 348 Pfam Mitochondrial carrier protein 124 222 IPR018108 -
Seca4g01200 348 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Seca4g01200 348 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Seca4g01200 348 PRINTS Mitochondrial carrier protein signature 258 280 IPR002067 GO:0055085
Seca4g01200 348 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
Seca4g01200 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
Seca4g01200 348 Gene3D Mitochondrial carrier domain 29 347 IPR023395 -
Seca4g01200 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01200 Seca-Chr4 19170919 19171965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01200 1 345 Chloroplast and Mitochondria Gene Families AT1G72820 66.954 9.46e-168 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01200 K15121 - gmx:100784202 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01200 4 19170919 19171965 Seca4g01200 4 19170919 19171965 ECH
Seca4g01200 4 19170919 19171965 Seca8g03351 8 96099658 96100686 ECH