Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01199 ATGATCTTCCAACAATATTTGAGGTTGTTACAGTTACAGGGATGGCCAAGAAACAAGCAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCTATGCAAGTGTGAAGTATTCAAACGCAATGCAACCGCAGGAGGGGGAATGAGGATGGTTTGCAAGTGGAAGATAAAGAGGAGCATGGAGAGACACTTTTTGGGGCATGTGGAGAGACTAGAGAGCTATGCAGCAGATGAGTTCTGGATTTACGGTGATATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTTCCCCTGCAAAGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 381 0.4304 MIFQQYLRLLQLQGWPRNKQRKSHQFLIIAVTNPNQTLCKCEVFKRNATAGGGMRMVCKWKIKRSMERHFLGHVERLESYAADEFWIYGDICEKWFHGKCVKISPAKAEHIKQYKCPSCSNKRARP. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01199 126 Pfam PHD-finger 81 122 IPR019787 -
Seca4g01199 126 FunFam PHD finger alfin-like protein 75 121 - -
Seca4g01199 126 SUPERFAMILY FYVE/PHD zinc finger 80 123 IPR011011 -
Seca4g01199 126 PANTHER CPG BINDING PROTEIN 77 125 IPR045104 GO:0006355|GO:0042393
Seca4g01199 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01199 Seca-Chr4 19164728 19165491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01199 78 125 Alfin-like Transcription Factor Family AT5G26210 87.500 2.81e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca4g01199 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01199 K26274 - gmx:100170697 104.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01199 4 19164728 19165491 Seca4g01199 4 19164728 19165491 ECH