Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01198 ATGAATACCAACACCAGAGCCGAAGCGGACAAGTTGCTTGAAATCGGCGAGCAACTTCTACAGAACCGCGATCTCAAAGCTTCCAGGGACTTAGCCATTCTAGCCCAAGAAACCGAACCCCTTCACGAAGGTTCGGACCAGCTCCTCGCCATCTTGGACGTCCTTGAAGCCGCAGAGAAATGCCCCAACAACAACACCCCTGACTGGTACGCTATTCTCCAGGTCGATCGCGCCACCAAAGACCTCAATCTCATCAAGAATCAGTACCGTAGGCTCGCCATTCTCCTTCAGCCTGATAAGAACATCTTCTCCTTCGCCCACCAAGCCCTCAAGCTCGTTTCGGATGCATGGGCCGTCTTATCTGACCCCGTCCAAAAGGCCATCTACGACCAGGCTTTTGACAGGCCCGGAGGTGATAGCCCGTCTACATTCTGGACTGCATGCCCCTATTGTTACCGGATGTATGAGTATCTTAGGGTTTACGAGGGTTGTTGTTTGAAGTGCCAGAATTGTGACAAATCGTTCCATGGACTCTCGATTCCTGCTATGCCGCAAATGGTGCCGGGGCAAGAAGCGTACTATTGTAACTGGGGATTCCTTCCGATGGGTTTTGTGTTCCAAAAGTTAGAGGATGGTGGGGAAACGGCGCCGGCGTCGGTTGTTCCCAATAATGGGGTTGCTTCTGCTCCGGCTCCGCCAAAGCGAGGAAGGCCACGAAAGATAATGGAGATAAGTTGTAGCTACAGATGCTACTGTGCCATAATTCAAATACCTGATTATACTTTCTGTCTATCTAGCCTTGAGCACTGGGAGGTCAATCTGCCTGCTGAGGAGGTGCCTCCTGAGCTTCCAGAGCCAGCATCGGGCAACAACTTTGCCAGAAATGGAATGCAAGAAAAGGACTGGCTATCCTTAGTCACTGTGCACAGTGATGCACGGTTACTTGCTGTGGCTCATTGCTTTGGTGCTAGATTTGGATTCGATAGGGCTGATATAGGTAACGTTTTTCCATTTCCCCTTCATATACACATGATTTTACTCTGCTAA 1047 0.5024 MNTNTRAEADKLLEIGEQLLQNRDLKASRDLAILAQETEPLHEGSDQLLAILDVLEAAEKCPNNNTPDWYAILQVDRATKDLNLIKNQYRRLAILLQPDKNIFSFAHQALKLVSDAWAVLSDPVQKAIYDQAFDRPGGDSPSTFWTACPYCYRMYEYLRVYEGCCLKCQNCDKSFHGLSIPAMPQMVPGQEAYYCNWGFLPMGFVFQKLEDGGETAPASVVPNNGVASAPAPPKRGRPRKIMEISCSYRCYCAIIQIPDYTFCLSSLEHWEVNLPAEEVPPELPEPASGNNFARNGMQEKDWLSLVTVHSDARLLAVAHCFGARFGFDRADIGNVFPFPLHIHMILLC. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01198 348 Pfam Alfin 267 331 IPR021998 GO:0006355|GO:0042393
Seca4g01198 348 SMART dnaj_3 67 125 IPR001623 -
Seca4g01198 348 CDD DnaJ 68 122 IPR001623 -
Seca4g01198 348 Gene3D DnaJ domain 55 139 IPR036869 -
Seca4g01198 348 SUPERFAMILY Chaperone J-domain 63 133 IPR036869 -
Seca4g01198 348 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 221 - -
Seca4g01198 348 ProSiteProfiles dnaJ domain profile. 68 133 IPR001623 -
Seca4g01198 348 Pfam DnaJ domain 68 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01198 Seca-Chr4 19161227 19163069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01198 2 232 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 49.407 3.94e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01198 - - gmx:100802055 315.079