Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01195 ATGGCGGATCCCAGGTTCGTTGTTCCATACAGTGACCCATATGAATCTCCTTTTAGCCCAGCCTTTTTCAATTTGGATAATCCCACACTAGCCGAATTATCCAACAACAATGCACCCATTCCCATTCCCACTTCCCTGCCCCAACAAAATCATTTTGGACTTCAACAGGGACAGGGTAGTAATCAGCTTCCTCCCTTTCCACCGGTTCAAGATCACTACATGCACGATAACAATAATAATAATTTTTCCTTTGGAGGAGGAGCAACGAACTTTGAAGCGGGTCCATCACAACTGCAAATGGATCAAATTCAACAACCGGCAAATGAGAATAATCAAAACCTTGTGTTCACACTTGATTATTGGCCCCCAACACCACTCCCATTCCTTTGCAGTTGTTGTCAAGTTCTCAGAGAAATAATTCACACCAATGGTTTTTACATTGAAAAGCTTGAGATTCATGGAAGGCTTGGGATAATTACCCATGCAATTCACCATCCCAATATTAATGGGGATCCTTCAAACAACCCTCCATATCAAATGATTGATTTTTGCAAGAAAAACATTGAGGAAATCAGGCTTATTCTAGAGCAGTACTGTGTGGAGCGTAATACAGGAGGGTGCTTTATGGTGCAAGATCCAATGTCTGCTTATTATGAGGCTCTCTGCACTGGACTGGATTGGACTGAAGATTTAAGTGACGATCTTGCTGATAACAATCAAAATAATTCAGATGGACAACAAGTTGATGGCAGGGAGCAAGAGGGTGACACTGGAACAACTCCTAGACCTTCCCTCGCAGAACAGAGAGAGAGAGCGGCAAAGATGACATTGAATGATCTGAGTGATTACTTTCATCTACCTATTGATAAAGCGTCAAAGCGAGTGAACTTATGCCCCACTGTTGTCAAGAAAGTTTGCCGTAAGGGAGGATTAGGACGATGGCCTTACAGAAAGGTGAAAAGCATTATGAAGCAAATTACAATACTGGGACGTGCATTAGATTCAGGAGATGCAGGGGTAAGGAGAAGAGCTCAAGCTGAAATTAACAGACTTGAACAAGAAATGATTCAAGCTTGTGGTGGAGTTGCCCCAACCGCACTACACTCTGTCCGCCGATGA 1119 0.4298 MADPRFVVPYSDPYESPFSPAFFNLDNPTLAELSNNNAPIPIPTSLPQQNHFGLQQGQGSNQLPPFPPVQDHYMHDNNNNNFSFGGGATNFEAGPSQLQMDQIQQPANENNQNLVFTLDYWPPTPLPFLCSCCQVLREIIHTNGFYIEKLEIHGRLGIITHAIHHPNINGDPSNNPPYQMIDFCKKNIEEIRLILEQYCVERNTGGCFMVQDPMSAYYEALCTGLDWTEDLSDDLADNNQNNSDGQQVDGREQEGDTGTTPRPSLAEQRERAAKMTLNDLSDYFHLPIDKASKRVNLCPTVVKKVCRKGGLGRWPYRKVKSIMKQITILGRALDSGDAGVRRRAQAEINRLEQEMIQACGGVAPTALHSVRR. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01195 372 MobiDBLite consensus disorder prediction 73 94 - -
Seca4g01195 372 PANTHER PROTEIN RKD4 111 357 IPR044607 GO:0003700
Seca4g01195 372 Pfam RWP-RK domain 274 322 IPR003035 -
Seca4g01195 372 MobiDBLite consensus disorder prediction 234 264 - -
Seca4g01195 372 MobiDBLite consensus disorder prediction 50 94 - -
Seca4g01195 372 ProSiteProfiles RWP-RK domain profile. 262 342 IPR003035 -
Seca4g01195 372 MobiDBLite consensus disorder prediction 50 65 - -
Seca4g01195 372 MobiDBLite consensus disorder prediction 233 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01195 Seca-Chr4 19146790 19148930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01195 275 335 NLP Transcription Factor Family AT4G24020 39.344 6.74e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca4g01195 RWP-RK 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01195 - - lang:109354161 378.252