Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01186 ATGAACTTGAGTAACAGCCCTCAGAAACTGTCTCGGCAGTCTTCATCAGGAGCGAAGAAAGAGCCAATTAGCACTTTCCCGAGTGGTTGCTGTCGAGGCTTCACCAGCGTTAGGACTGCGACATCCACCACATCAACCGCACAACACCATCACCGTTATGAAAAATTGGAAGCAAAGGTGGCAGATTTGGAAAAAGAGGTGGAAAAGCAAACAGAACTCCGAGTGATGTATAAGAAAAGAATGGAAAGGACGCAAGACTACTTACGGTACTGCCTCCAAATAGCACAGGAGAATGGAATCTTGGACCTCATTATCCGCTCCAAAGGTGAATTTCAACAATCTCCTTCTCCTCTCTCTTTGTACACTATCAACTCTATCACCACCAGCCCTCAGGTTCCCACTCCTATGCACCACCACTCTAATCTAGCGGCCATCATTGATCAAGCCAAAATCAACGGCTGGTATATTAATCCAACCGAGATTCAATTGGAAGAGAAAATAGGGCAGGGAAGCACTGCAGACATTTACAGGGCTACATGGCGTGGATTTGATGTGGCAGTGAAGTGCATTTCTGCTGAATTCTTCCACACAAATGCAAACGGTGTTGAATTCTTCGGTCAGGAGCTTGAAACTTTGTCAAAGCAACGACACCGTTTTGTGCTTCATTTGATGGGTGCGTGTTTTGAGCCTCCTCATCATGCGTGGGTTGTTACCGAATATCTTAGCACCACGCTGAAGGAGTGGTTATATGGGCCTGGCAAAAGGCGCAAAGACAGAATCGTGCCACTTCCTCCTTTTAAAGAAAGAGTAATGAGGGCCTTAGAGATAGCCCAAGCCATGCAGTATCTACATGAACAAAAGCCCAAAGTCATTCACCGTGACTTGAAGCCCAGCAACATTTTCTTGGACGATGCCATGCATGTTAGAGTTGCTGATTTTGGACATGCTCGCTTCTTAAGTGATGGGGAAATGGCTCTCACAGGAGAAACAGGAACATATGTTTATATGGCACCAGAGGTGATTCGATGTGAGCCCTATAATGAAAAATGTGATGTGTACAGTTTCGGAATCATACTGAATGAGCTTATCACTGGAAAATACCCATATATTGAGACAGAATATGGTCCTGCCAAGATTGCTATGGAAGTTGTGGAGGGCAAGTTGCGGCCTATACTTCCATCAAGGGATGATGGTGAAGTGGGAGAGCTGATTGACATAATATGCCTTTGTTGGGATGGAAATCCATTCACTCGACCATCCTTTGCAACAATCAGTCGTATTCTTAAAAGCTATGCCAACAGGGTCTTTCAATGTTCAAACTAG 1323 0.4497 MNLSNSPQKLSRQSSSGAKKEPISTFPSGCCRGFTSVRTATSTTSTAQHHHRYEKLEAKVADLEKEVEKQTELRVMYKKRMERTQDYLRYCLQIAQENGILDLIIRSKGEFQQSPSPLSLYTINSITTSPQVPTPMHHHSNLAAIIDQAKINGWYINPTEIQLEEKIGQGSTADIYRATWRGFDVAVKCISAEFFHTNANGVEFFGQELETLSKQRHRFVLHLMGACFEPPHHAWVVTEYLSTTLKEWLYGPGKRRKDRIVPLPPFKERVMRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDAMHVRVADFGHARFLSDGEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGIILNELITGKYPYIETEYGPAKIAMEVVEGKLRPILPSRDDGEVGELIDIICLCWDGNPFTRPSFATISRILKSYANRVFQCSN. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01186 440 SMART serkin_6 161 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01186 440 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Seca4g01186 440 PIRSF TyrPK_CSF1-R 267 437 - -
Seca4g01186 440 PIRSF TyrPK_CSF1-R 30 97 - -
Seca4g01186 440 Coils Coil 46 80 - -
Seca4g01186 440 Pfam Protein kinase domain 162 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01186 440 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 429 - -
Seca4g01186 440 Gene3D Transferase(Phosphotransferase) domain 1 263 439 - -
Seca4g01186 440 Gene3D Phosphorylase Kinase; domain 1 149 241 - -
Seca4g01186 440 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g01186 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Seca4g01186 440 CDD STKc_MAP3K-like 167 428 - -
Seca4g01186 440 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g01186 440 ProSitePatterns Protein kinases ATP-binding region signature. 167 188 IPR017441 GO:0005524
Seca4g01186 440 ProSiteProfiles Protein kinase domain profile. 161 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01186 Seca-Chr4 18958196 18960472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01186 128 429 MAP Kinase Kinase Kinase AT5G03730 35.526 1.47e-47 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Seca4g01186 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01186 - - gmx:100810435 692.96