Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01184 ATGGATGCTACTAAGCATCAAGGCGGCGAAGTAAGCATGACAGAGAATAAAAGAGAAGTGGTGGTGGCGATTCCAAATGCTGGTGGAGAGAGCCATGAGTTGAAAGGGGTTGAATCTTTAACCCCCAAACATAGCTCACCTCACACAATATCCTATGACAACGAGCTTTCTGCAGCATCAAAGTCACCACCTTTGAATTGTGCTTCCCCTGAGATAAGGTTCATTCCCACCAGCCCAAATAAGCCCCCTAAAGTTCCTACTTCCAACCTCACCCGAAGAAGATCACTTGCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGTTGAACAACCTTATTCCATTGATGGGACCATTTTAGAAGAGAATAGTACTTCAACTTTGCAAGAACAAATGGCTGTTAGTTCACCATTTAGGAACTCTTTTAATAAAGCATCACCTAATAACAAATCTGGGACAGTTAATAGAACTGTCTCCATCACTTCTGTTATCACTCCCAAGACACCATTGATGGCATCTCCTGGGCCTGCTGGGGAGGAGGATCTGGATGAAATCATTTATAGGAAAGTTGAATTGAGTAAAGGCAAGAGTAAGAGACTGAAAACTAAGGTTTTGATAGAATGGTTTGTGTTTGTGTGCATTGCGGGTAGCCTGCTGGCTAGCTTAACAGTTGACAAATTGAAAAAGACTAAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGTTGGTGACCTTTTGTGGTATGTTGGTTACCAAGTGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAATGTGTTCAGGTCTTCATTTGGGTTGGCTTGGTTCTTCTCACATGGGTGCTGTTGATCAATCGTGGGGTCCAACGATCTGAGTTGGCCTCGAAAATTTTGAATGGGGTGACATGGACTCTTGTCTCTCTTCTCATTGGAGCTTTCTTGTGGGTCATAAAGACATTGCTTCTAAAGATTTTGGCATCAAATTTCCATGTCAAATCTTTCTTTGATAGGATTCAAGAATCAATCTTCCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGAAGAGGCTGAGAAGGTCGGGGGATCGCAGAGTATTGGTCATTTTAGTTTCAGGAGTACGACTAGTAAAGGTGGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCTGCATGGACTATGAAGATGTTGGTAGATGCAGTGACAAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAAGTTTTTATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTTAGAAATGTTGCTGCCCCTGGTTGGACTAGGTACATTGACGAGGATGAACTACGGAGGTTCATGATTAAGGAAGAAGTGCGTGTGGTATTTCCCCTCCTCGCCCAACCAGATACAGGGCAAATTACCAGAAAGTCATTGACAGACTGGTTGTTGAAGGTATATCAAGAACGTAAAGCATTGGCACATGCCTTAAGTGACACCAAAACAGCTGTAAAACAATTAAACAAGCTGGTGACTGTGGTCCTACTAGTGGTGACCATAATAGTGTGGCTTTTACTGATGGAGATTGCAACTACAAAAGTACTTTTATTCTTCTCATCACAACTATTAGTTGCAGCTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTATCATTTTTGTGTTTGTAATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTAGATGGTGTTCAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGGCTAATAATGAAAAGGTTTACTTTCCAAATTCTGTCCTGGCCACAAAACCGATTAGCAATTATTACAGAAGCCCAGATATGGGTGACAGTGTAGAGTTCGCAATTGATTTTATGACACCAGCAGAGAAAATCGGGGCACTGAAAGAAAAAATAAAGAGGTACTTGGAGAGAAATCCACAATACTGGCATCCAAATCACAACTTAGTAGTACAGGAGATAGAGAATGTAAATAAGATTAAGATGGGTCTCTTTGTTACCCACACAATGAACTTTCAAGAATTTGGGGAGAAGAACAAGCGGAGAAGTGAACTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTCCTTCCACAAGATGTTCATCTCAGACATATGGAGCCAGATACCAATGTAATCCATAGATGA 2334 0.4062 MDATKHQGGEVSMTENKREVVVAIPNAGGESHELKGVESLTPKHSSPHTISYDNELSAASKSPPLNCASPEIRFIPTSPNKPPKVPTSNLTRRRSLARSVYSKPKSRFVEQPYSIDGTILEENSTSTLQEQMAVSSPFRNSFNKASPNNKSGTVNRTVSITSVITPKTPLMASPGPAGEEDLDEIIYRKVELSKGKSKRLKTKVLIEWFVFVCIAGSLLASLTVDKLKKTKIWGLGFWRWCVLVLVTFCGMLVTKWFMHIVVFLIEMNFLLRKKVLYFVHGLKKCVQVFIWVGLVLLTWVLLINRGVQRSELASKILNGVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSIGHFSFRSTTSKGGTKKEVIDMAKLHKMKQEKVSAWTMKMLVDAVTNSRLSTISNSLDESFYEGENEQTDKEITNEMEATAAAYYIFRNVAAPGWTRYIDEDELRRFMIKEEVRVVFPLLAQPDTGQITRKSLTDWLLKVYQERKALAHALSDTKTAVKQLNKLVTVVLLVVTIIVWLLLMEIATTKVLLFFSSQLLVAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKANNEKVYFPNSVLATKPISNYYRSPDMGDSVEFAIDFMTPAEKIGALKEKIKRYLERNPQYWHPNHNLVVQEIENVNKIKMGLFVTHTMNFQEFGEKNKRRSELVMEIKKIFEELNIRYNLLPQDVHLRHMEPDTNVIHR. 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01184 777 Gene3D - 609 658 IPR023408 -
Seca4g01184 777 FunFam Predicted mechanosensitive ion channel 609 658 - -
Seca4g01184 777 SUPERFAMILY Sm-like ribonucleoproteins 599 658 IPR010920 -
Seca4g01184 777 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 53 773 IPR016688 -
Seca4g01184 777 PIRSF Memb_At2g17000 4 777 IPR016688 -
Seca4g01184 777 MobiDBLite consensus disorder prediction 25 47 - -
Seca4g01184 777 Pfam Mechanosensitive ion channel 549 755 IPR006685 GO:0016020|GO:0055085
Seca4g01184 777 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01184 Seca-Chr4 18915258 18918900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01184 60 765 Mechanosensitive Ion Channel Family AT5G12080 60.478 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01184 K22048 - gmx:100803107 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01184 4 18915258 18918900 Seca4g01184 4 18915258 18918900 ECH