Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01174 ATGGCTACTCATCTGCTCAGGCTTTCTCTCTCCTCACAACCTAAACTTTGCTTCAATTACACACCCAACCATGATATCCGCTTCATTTCTCTGCTCCCGGCAAAACGACGTCGCAATCGTTACCGCCACCTCCGGGGAATTCTCCGGCCACATTTCGTCGTATCAAACTCCTTTGGTACTAAAATTGGCTCGCCGGAATCAGCTCTTCTTCGAGGCCAGGCACAGAGCAAAGACTCGCCGGTTCTACTCGACGTTACCGGGATGATGTGTGGCGCGTGCGTCTCCCGAGTCAAAAACATCTTGTCCGCCGATGACCGAGTCGACTCGGTCGTGGTCAACATGCTGACCGAGACCGCCGCCGTTAAGTTGAGACAGATGGAGGAGGAACCGACGAGTGTTGCGGAGAGCCTTGCTCGGAGATTGAGCGATTGCGGGTTTCCGGCGAAGCGGAGAGCCTCGGGTTCGGGAGTGGCGGAAAATGTGAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAACTGGTCGCCAAGAGTCGAAGCCGCGTCGCTTTCGCTTGGACTTTGGTGGCATTGTGCTGTGGATCGCATGCTTCGCATATTTTTCATTCTTTGGGAATTCACATTGCTCATGGATCGTTTTGGGAAATTCTTCATAATTCATATGTGAAAGGTGGTTTAGCTTTGGGCTCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCGTTTAAGAAGCGGTCTCCAAATATGAACTCCCTCGTGGGATTTGGTTGTATAGCTGCTTTCATCATCAGTTCGATCTCACTACTTAACCCCGAGCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAGGAAAAGGCTAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTGTAAGTTGCAATGCAGTTCATCTCTTTCGTCTGATAATATTCCAGCAAAATAGGATCCAGTCACTGATATCTACTCAGTCAAGACTTGTGATTGCTTCATCAGAAGGTTCACCATCTACTGACAGTGTGCTTGGTGCTGACGCACTTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTGTAGATGGAAAGGTCATCTCGGGAAGAAGCGTTGTGGATGAATCGATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGTCTTACAGTTTCAGCGGGAACTATAAATTGGGATGGCCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCGATAGCAGGGCCATTTGTATACACTGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTATTGGATCACACATATTTCCTGATGTTTTGCTTAATGACATTGCGGGCCCAGAAGGAGATCCTTTACTTTTGAGTTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCACTGGGTCTTGCCACACCAACAGCAATACTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGAGGAGGAGATGTGCTGGAACGCTTGGCCAATGTAAAGTATATTGCTTTAGACAAGACAGGAACTCTCACCAGAGGGAAACCAGTTGTGTCTGCCATAAGTTCTATTCATTATGGAGAGTCAGAAATTCTTCAGATTGCTGCTGCAGTGGAGATAACTGCTTCTCATCCAATTGCAAAGGCTATTGTCAATAAAGCTGAGTCTTTAGAGTTGGTCCTTCCAGTCACAAAAGGACAGTTAGTTGAACCAGGGTTTGGAACCTTAGCAGAAATAGACGGGCGTTTGATTGCAATTGGGTCTTTAGAATGGGTCCATGAACGCTTCCACACTAGAATAAACCCATCTGATTTGATGAATCTGGAACAGACTTTGATAAATCATTCATCAAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTACGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCTTATCTGACATTGTGCGTGAAGATGCTGAATCTACTATAATGAGGCTCAAGCAGAAGGGGATTAAAATGGCCCTCATATCAGGAGACAGGGAAGAAGCAGTTGCAACAATAGCAGAGACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTCTGTCTCCACAGCAGAAATCTGGATTTATTTCATCTCTGAAAGCTGCTGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCTTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGATGCTCAAGAGAATGCTGCCTCAGATGCAGCATCCATTATACTGCTGGGGAACAAAATTTCACAAGTTGTCGATGCACTAGACCTAGCACAAGCAACAATGGCGAAAGTGTACCAAAACTTGTCTTGGGCAGTAGCCTACAATGTTGTTGCCATTCCCATTGCTGCTGGTGTGTTACTTCCCCAGTTTGACCTTGCCATGACACCTTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTAGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGACCTCCACTAAGGGCTCACTCTAG 2721 0.459 MATHLLRLSLSSQPKLCFNYTPNHDIRFISLLPAKRRRNRYRHLRGILRPHFVVSNSFGTKIGSPESALLRGQAQSKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRQMEEEPTSVAESLARRLSDCGFPAKRRASGSGVAENVRKWKELVKKKEELVAKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGSFWEILHNSYVKGGLALGSLLGPGRELLFDGLNAFKKRSPNMNSLVGFGCIAAFIISSISLLNPELAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLVSCNAVHLFRLIIFQQNRIQSLISTQSRLVIASSEGSPSTDSVLGADALCVEVPTDDIRVGDSVLVLPGETIPVDGKVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYTVMTLSAATFAFWYFIGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLANVKYIALDKTGTLTRGKPVVSAISSIHYGESEILQIAAAVEITASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEIDGRLIAIGSLEWVHERFHTRINPSDLMNLEQTLINHSSNTTSSKYSKTVVYVGREGEGIIGAIALSDIVREDAESTIMRLKQKGIKMALISGDREEAVATIAETVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNDAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFDLAMTPSLSGGLMALSSIFVVSNSLLLQLHGSQTSTKGSL. 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01174 906 Gene3D - 560 833 IPR023214 -
Seca4g01174 906 Gene3D - 331 456 - -
Seca4g01174 906 ProSiteProfiles Heavy-metal-associated domain profile. 79 149 IPR006121 GO:0046872
Seca4g01174 906 CDD HMA 83 149 IPR006121 GO:0046872
Seca4g01174 906 FunFam Copper-transporting ATPase PAA2, chloroplastic 580 713 - -
Seca4g01174 906 NCBIfam heavy metal translocating P-type ATPase 253 893 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca4g01174 906 Pfam haloacid dehalogenase-like hydrolase 565 796 - -
Seca4g01174 906 Pfam E1-E2 ATPase 359 549 - -
Seca4g01174 906 SFLD p-type atpase 552 835 IPR044492 -
Seca4g01174 906 SUPERFAMILY Calcium ATPase, transmembrane domain M 453 563 IPR023298 -
Seca4g01174 906 SUPERFAMILY HMA, heavy metal-associated domain 80 149 IPR036163 GO:0046872
Seca4g01174 906 Pfam Heavy-metal-associated domain 83 146 IPR006121 GO:0046872
Seca4g01174 906 NCBIfam HAD-IC family P-type ATPase 366 866 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g01174 906 Gene3D - 580 713 IPR023299 GO:0000166
Seca4g01174 906 FunFam Copper-transporting ATPase PAA2 chloroplastic 78 151 - -
Seca4g01174 906 Gene3D - 72 152 - -
Seca4g01174 906 PANTHER ATP7, ISOFORM B 75 895 - -
Seca4g01174 906 SUPERFAMILY HAD-like 567 890 IPR036412 -
Seca4g01174 906 SUPERFAMILY Calcium ATPase, transduction domain A 364 452 IPR008250 -
Seca4g01174 906 SFLD C1.7: P-type atpase like 552 835 - -
Seca4g01174 906 PRINTS P-type cation-transporting ATPase superfamily signature 402 416 - -
Seca4g01174 906 PRINTS P-type cation-transporting ATPase superfamily signature 782 801 - -
Seca4g01174 906 PRINTS P-type cation-transporting ATPase superfamily signature 569 583 - -
Seca4g01174 906 PRINTS P-type cation-transporting ATPase superfamily signature 727 737 - -
Seca4g01174 906 PRINTS P-type cation-transporting ATPase superfamily signature 705 716 - -
Seca4g01174 906 FunFam Copper-transporting ATPase 1, putative 331 456 - -
Seca4g01174 906 ProSitePatterns E1-E2 ATPases phosphorylation site. 571 577 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01174 Seca-Chr4 18807403 18818388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01174 244 894 Primary Pumps ATPases AT1G63440 36.254 1.00e-109 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01174 K17686 - gmx:100127402 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01174 4 18807403 18818388 Seca4g01174 4 18807403 18818388 ECH