Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01171 ATGATATTGCTGGCAGCTTGCCGACCACACAATCCTACTCCTTTTCCTGATGGATCATTTGACAAGCCAGTTAATTATTCACCTCCAAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTGAGTGAGAAATACATGATTGGATATGGTGCTTCAAGTACAGTTTATAAATGTGTACTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTTTATTCTCACTATCCACAATACTTGAAAGAATTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACCGCAATCTGGTCAGTCTTCAAGGCTACTCTCTGTCTCCATATGGAAACCTTCTCATCTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGATCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGGCTAAAAATAGCACTTGGAGCAGCCCAAGGGCTTGCATATCTACACCATGATTGCAGTCCTCGTATCATTCACAGGGACGTGAAATCATCTAACATTTTATTAGACAAAGACTTTGAGCCCCATCTCACCGATTTTGGCATTGCCAAAAGTCTATGCCCCTCTAAGTCCCACACTTCAACTTACATAATGGGCACAATTGGCTATATAGACCCTGAGTATGCTAGAACTTCCCGGCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATTGTATTACTTGAGCTGTTAACTGGGAGGAAAGCTGTTGACAATGAATCAAACCTTCATCATCTGATTCTGTCCAAGACAGCTAACGATGCCGTGATGGAAACGGTTGATCCGGATATTATTGCCACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTATGCACAAAGAGGCAGCCAACTGTTAGGCCTACAATGCATGAGGTGTCACGCGTGCTGGGAAGTCTTGTACCATTCACCACTCCACCAACACAAGTACTGCTGCCTGATTCACAGCCATGTGCTCCTAAGGTACAATGCTACAAGGATGAGTATGCAAATCTCAAAACTCCACACTTGGTGAACTTCCCAACCATGAGCACCTCTGATGCTCAACTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAAAACAGTAGTGACTGCAGAATTTGA 1170 0.4282 MILLAACRPHNPTPFPDGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYMIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLIYDYMENGSLWDLLHGSTKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDAVMETVDPDIIATCKDMGAVKKVFQLALLCTKRQPTVRPTMHEVSRVLGSLVPFTTPPTQVLLPDSQPCAPKVQCYKDEYANLKTPHLVNFPTMSTSDAQLFLKFGEVISQNSSDCRI. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01171 389 Gene3D Phosphorylase Kinase; domain 1 26 128 - -
Seca4g01171 389 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 129 330 - -
Seca4g01171 389 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 128 - -
Seca4g01171 389 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Seca4g01171 389 Pfam Protein kinase domain 56 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01171 389 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 40 319 - -
Seca4g01171 389 Gene3D Transferase(Phosphotransferase) domain 1 129 326 - -
Seca4g01171 389 SMART serkin_6 53 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01171 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Seca4g01171 389 ProSiteProfiles Protein kinase domain profile. 53 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01171 389 CDD STKc_IRAK 59 322 - -
Seca4g01171 389 SUPERFAMILY Protein kinase-like (PK-like) 30 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01171 Seca-Chr4 18765486 18768610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01171 1 384 Receptor kinase-like Gene Family AT5G62230 63.542 7.05e-169 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Seca4g01171 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01171 K20718 - gmx:100804875 711.064