Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01166 ATGAGTTCTAAAAAGATTACATGGAAGTCCATTGTCTTCATCTTGAGTTGTTACAAGATTAAATGCCCCTTGCAGGAATCAGAAAAACGGGTTTTGAAACAAGGTTCTTTCCAAAGGCTATGCCTCTCTGATGTAAGCATTTCAAGCTCCACTCAGGCCATTGAAGATATTTCCATTTCCTTAGTTGGCTCAAAGCTTTACACATTCACCTTAGAGGAGCTGAAAGAAGCAACACATAATTTCTCATGGAGTAATCTGCTTGGTGAAGGTGGGTTTGGACCTGTGTACAAAGGTTTTGTTGATGACAAACTCAAACCTGGTTTGAAGGCTCAGCCTGTAGCTGTGAAGAGACTCAACTTGGATGGCTTGCAAGGTCACAGAGAATGGCTGGCAGAAATTATATTTCTGGGACAGCTGAGACATCCACATCTTGTGAAGTTAATTGGATACTGTTGTGAGGAGGAGCACAGGCTTTTGGTGTATGAATACATGGCAAGAGGGAGTTTGGAGAATCAATTGTTCAGAAGTATGTTGCTTTTCTTTATTCTACTTCTTTTTCTTTTTTTTTCCCTCTTAATTGTTCTGATACAAGCAGGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAAATTGCATTAGGTGCAGCTAAGGGTCTGGCCTTCCTTCACGAAACAGATAAACCTGTAATTTACAGGGATTTCAAAACTTCAAATATCTTACTTGACTCGGATTACACAGCTAAACTATCAGACCTTGGGCTAGCTAAGGATGGTCCTGATGGGGAACATACACATTTAACAACAACATGCATAATGGGAACACGAGGCTATGCTGCTCCTGAGTACATCATGGCAGGTCACCTTTCCACCAAGAGTGATGTGTATAGCTATGGAGTTGTTTTGTTGGAACTGCTTACTGGAAAACGGGTAGTGGACAAGAGCCGGCCAAATAGAGAGAGAAGCCTGGTAGAATGGGCGAGGCCTCTTTTGAGAGATCAAAGGAAGCTGCATCATATCATAGACCCAAGATTGGAAGGGCAATTTCCTATGAAAGGAGCTCTGAAGGTTGCTGCATTGACTTATAAATGCTTAAGCCACAACCCCAATCCAAGGCCCAATATGAGTGATTTGGTAAAGATATTGGAGTCACTTCAGGACTTTGAAGATGTGATTATAGGACCATTTGTGTATGTGGCCGTTAATGAAAGTGGTCACTGA 1221 0.421 MSSKKITWKSIVFILSCYKIKCPLQESEKRVLKQGSFQRLCLSDVSISSSTQAIEDISISLVGSKLYTFTLEELKEATHNFSWSNLLGEGGFGPVYKGFVDDKLKPGLKAQPVAVKRLNLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRSMLLFFILLLFLFFSLLIVLIQAGYSAALPWSTRMKIALGAAKGLAFLHETDKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPDGEHTHLTTTCIMGTRGYAAPEYIMAGHLSTKSDVYSYGVVLLELLTGKRVVDKSRPNRERSLVEWARPLLRDQRKLHHIIDPRLEGQFPMKGALKVAALTYKCLSHNPNPRPNMSDLVKILESLQDFEDVIIGPFVYVAVNESGH. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01166 406 SUPERFAMILY Protein kinase-like (PK-like) 57 383 IPR011009 -
Seca4g01166 406 Gene3D Transferase(Phosphotransferase) domain 1 192 393 - -
Seca4g01166 406 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 190 391 - -
Seca4g01166 406 PANTHER OS01G0588500 PROTEIN-RELATED 53 386 - -
Seca4g01166 406 Pfam Protein tyrosine and serine/threonine kinase 84 382 IPR001245 GO:0004672|GO:0006468
Seca4g01166 406 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Seca4g01166 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Seca4g01166 406 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Seca4g01166 406 ProSiteProfiles Protein kinase domain profile. 81 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01166 Seca-Chr4 18639677 18643042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01166 68 382 Glycoside Hydrolase AT3G07070 48.418 3.72e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g01166 PK_Tyr_Ser-Thr 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01166 - - gmx:100805771 667.151