Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g01166 | ATGAGTTCTAAAAAGATTACATGGAAGTCCATTGTCTTCATCTTGAGTTGTTACAAGATTAAATGCCCCTTGCAGGAATCAGAAAAACGGGTTTTGAAACAAGGTTCTTTCCAAAGGCTATGCCTCTCTGATGTAAGCATTTCAAGCTCCACTCAGGCCATTGAAGATATTTCCATTTCCTTAGTTGGCTCAAAGCTTTACACATTCACCTTAGAGGAGCTGAAAGAAGCAACACATAATTTCTCATGGAGTAATCTGCTTGGTGAAGGTGGGTTTGGACCTGTGTACAAAGGTTTTGTTGATGACAAACTCAAACCTGGTTTGAAGGCTCAGCCTGTAGCTGTGAAGAGACTCAACTTGGATGGCTTGCAAGGTCACAGAGAATGGCTGGCAGAAATTATATTTCTGGGACAGCTGAGACATCCACATCTTGTGAAGTTAATTGGATACTGTTGTGAGGAGGAGCACAGGCTTTTGGTGTATGAATACATGGCAAGAGGGAGTTTGGAGAATCAATTGTTCAGAAGTATGTTGCTTTTCTTTATTCTACTTCTTTTTCTTTTTTTTTCCCTCTTAATTGTTCTGATACAAGCAGGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAAATTGCATTAGGTGCAGCTAAGGGTCTGGCCTTCCTTCACGAAACAGATAAACCTGTAATTTACAGGGATTTCAAAACTTCAAATATCTTACTTGACTCGGATTACACAGCTAAACTATCAGACCTTGGGCTAGCTAAGGATGGTCCTGATGGGGAACATACACATTTAACAACAACATGCATAATGGGAACACGAGGCTATGCTGCTCCTGAGTACATCATGGCAGGTCACCTTTCCACCAAGAGTGATGTGTATAGCTATGGAGTTGTTTTGTTGGAACTGCTTACTGGAAAACGGGTAGTGGACAAGAGCCGGCCAAATAGAGAGAGAAGCCTGGTAGAATGGGCGAGGCCTCTTTTGAGAGATCAAAGGAAGCTGCATCATATCATAGACCCAAGATTGGAAGGGCAATTTCCTATGAAAGGAGCTCTGAAGGTTGCTGCATTGACTTATAAATGCTTAAGCCACAACCCCAATCCAAGGCCCAATATGAGTGATTTGGTAAAGATATTGGAGTCACTTCAGGACTTTGAAGATGTGATTATAGGACCATTTGTGTATGTGGCCGTTAATGAAAGTGGTCACTGA | 1221 | 0.421 | MSSKKITWKSIVFILSCYKIKCPLQESEKRVLKQGSFQRLCLSDVSISSSTQAIEDISISLVGSKLYTFTLEELKEATHNFSWSNLLGEGGFGPVYKGFVDDKLKPGLKAQPVAVKRLNLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRSMLLFFILLLFLFFSLLIVLIQAGYSAALPWSTRMKIALGAAKGLAFLHETDKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPDGEHTHLTTTCIMGTRGYAAPEYIMAGHLSTKSDVYSYGVVLLELLTGKRVVDKSRPNRERSLVEWARPLLRDQRKLHHIIDPRLEGQFPMKGALKVAALTYKCLSHNPNPRPNMSDLVKILESLQDFEDVIIGPFVYVAVNESGH. | 407 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g01166 | 406 | SUPERFAMILY | Protein kinase-like (PK-like) | 57 | 383 | IPR011009 | - | |
Seca4g01166 | 406 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 393 | - | - | |
Seca4g01166 | 406 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 190 | 391 | - | - | |
Seca4g01166 | 406 | PANTHER | OS01G0588500 PROTEIN-RELATED | 53 | 386 | - | - | |
Seca4g01166 | 406 | Pfam | Protein tyrosine and serine/threonine kinase | 84 | 382 | IPR001245 | GO:0004672|GO:0006468 | |
Seca4g01166 | 406 | Gene3D | Phosphorylase Kinase; domain 1 | 42 | 163 | - | - | |
Seca4g01166 | 406 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 230 | 242 | IPR008271 | GO:0004672|GO:0006468 | |
Seca4g01166 | 406 | FunFam | Serine/threonine-protein kinase BIK1 | 48 | 163 | - | - | |
Seca4g01166 | 406 | ProSiteProfiles | Protein kinase domain profile. | 81 | 397 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g01166 | Seca-Chr4 | 18639677 | 18643042 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g01166 | 68 | 382 | Glycoside Hydrolase | AT3G07070 | 48.418 | 3.72e-93 | 284 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Seca4g01166 | PK_Tyr_Ser-Thr | 2.2e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g01166 | - | - | gmx:100805771 | 667.151 |