Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01161 ATGGGTTCCTCAGACCAAAACAATAACCAGGACCAGACCCAAAATAATAGTCTCAAGAGAACCTTCGATCACTTATACACAAAGCCCGAACCTGATGATTCTCCATTTCAAGAATCGCTCTCACCCGACAACATTGATCCCAGAGGGTATCAGTTAGAGGTGTTTGAAGTTGCAAGAAGGAGGAATACAATAGCAGTGTTGGACACAGGCTCTGGCAAGACATTGATAGCTATAATGCTTATAAAAGACATTGGCCAAGCAATCAAGTCTAGTGGGGTAAAGAAGTTGATTGTTTTCTTAGCTCCCACTGTTCATCTTGTCAATCAGCAATACAAGAATATAAAACATCTTACAGATTTTCAAGTGGAGGAATACTATGGGGCTAAAGGGGTCGATACATGGAATGGAAAGACCTGGGAGAAGGAGATTAGTGACAATGATGTACTGGTAATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATAGAAATGATATGCTTGTTGATTGTTGATGAATGTCATAGAGCAACTGGCAACCATCCCTATGCAAAAGTAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAAGTTTTTGGGATGACAGCATCGCCAGTAGGTAAAAAAGGTATTTCCTCTACTTTGGATTGTGAGGGTCAGATATCAGAACTTGAAAACATCTTGGATGCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATGTATATATCCCTTCTGCAAAAGAGAGTTGTATATATTATGACCAAGCACGGTCTCCTGCTTTGAATTTAAAGCCAAAGATTGAAGCCTTGTGGTTGAAGTGTGATGCATTGTTGTCAGAATTTCAGAGTAACTACAAGGACATGGACAATAAATTTAAGACACTGCATCAGCGGATGTCAAATGAACTAGCAAAAATTTTACATTGCCTTGAAGATCTTGGACTCTTATGTGCTTACGAGGCTGTTAAAATCTGTCATGAAAATTTCTCCAAAATTGAAGGAGAGTGTGAAGTTTATAGAAAAGGTTATCTTCGGTGTATAACTGTCATTGAAGAAGTAATTCAAATAATTGAAGAATCCCTCCATCTTGCTGATAAAATGATTTTGGATGCTGAATTTGATTATTCAAAGGCAGTAGACTTGGGATACATATCTCCAAAATTACTTGAACTTATTAAACTCTTCCAGACCTTTGGAGAATCTAGTCAGGTGCTGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTAAAGAAAGCTTCCCAGATATCTCATTTCACAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCACTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTTCCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCCAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAACTTGAAACAAAGAAATCAACTCTTCGACATAATCAGGAGTGAGCGCTCTATGACTGATGCAGCTATTAATAAAGACCATGAATCTAATCTAAGAGCGTTTACAGTAGAGAAAACAAATGCATACCATGTGGAATCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTACTCTTATAAATAAATATTGTGAAAAGCTCCCACGAGATAAGTACTCATGTACAAAGCCCACTTTTGAGTTTCTGCCTATGGAAGGGTGTTACCAGTGCAAATTAATTTTACCACCTAATGCAGCTTTCCAAACAATAATTGGTCCTTCAGGAAAAGATGTTCGTTTGGCAAGGAATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCTTTAAATGAACATCTTGTCCCATCCATTGAAGATCCTTCAGAAGCTGACCATATTGTGAAAAACAAAGATTCAAGTTCAGGTGCAGGTGCAGGTATAAATGTTTTGCTGATTAATTTGTTATACTTGTTTATAAATTGGGACCTGCAAATGTTTATTTATGTCATTCAAAATATTCAGTTACTTGTGCTGATGCATTTTGATTTTACCTTGCTTTTGGCTTTTGAAGGAACCACAAAAAGAAAGGAGTTACATGGCACAACCAGCATTCGTGCATTATGTGGTACATGGGATGACAAACTTGATGGAGCCAAATTTCATGCTTATAAATTCGAATTCACTTGTAATATTGTTAGTGAAATTTTTTCTGGATTTGTTCTTCTGATGGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATTGGATCTTTATTTGGTCTCTAAGACTGTGAAGGCTTCAGTTTCTTCCTGTGGGCAAGTTGATCTGGATGCAGAACAGATGATGAAAGCTAAATGTTTCCATGAGCTTTTCTTCAATGGTTTGTTTGGGAAATTGGTTCTTAGGTCCAAATCAGCCAAAGGGGAATGGGAATTTTTACTTCAAAAGGACACAAAATCATTGTGGAGCCCAAAAAACTTATATTTGCTTCTACCACTTGAGAAATTCCGTGATATATCTAAGGGTTCTTTGCAAATACATTGGTCTGGAATCAATTCTTGTGCATCTGCAATTGAATTTTTAAGGCGGAAATTTTCATTGGTTGCTGGAGATGGTGCTGATAAGGGCAAAATCACATCACCATGTGATACCAGTTCATCACATATGGAATATGAAAGTGCACACGAGATTCACTTTGCTAATTGTGTGGTCAACATTAATAATCTGAAAAATATGGTGGTTTTGGCCATTCACACTGGGAAAATATATTGTATCATTGAAGTAGTCAGTAGCCTATCTGCTGAAAGTCCTTTTGATGGAAACAATGAAAAGTCTGGGGCAGAATGCATAACTTTCTCGAATTATTTCAACAAAAGGTATGGGATTACGCTGAGACATCCAGGACAGCCTTTGTTACGGTTGAAGCAAAGTCATAATCCACACAATCTTTTGAACTTCCATGAGGAAGGGGAAAAGTCATCACAAATTGGCCCGGTAAATCCAAAAATGCCAGCACACGTTCACATGCCACCTGAGCTTCTATGCCTTCTTAATGTTAAAAGAGATGTTTTGAAGTCAATGTACTTGCTACCATCAATGATGTACCGTATTGAATCTTTCATGTTGTCCAGTCAGCTTAGAGAAGAGATAAATGGAGAAACTAGCAATTTCAACATATCTAGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAAAATTTTTCAATGGAGCGTCTTGAGTTGCTAGGAGATTCTATTTTGAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTAACTGCCAGACGACAATCGGCTGTTCGTAATTCAACCCTACATAAACTGGGAACAGATCGCAAATTACAGGGATATATCCGAGACTCTGCTTTTGAACCGCGCCGTTGGGTTGCTCCTGGACAGCGCTCTATACACCCTGTTTCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATGTGAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTATGTGACAGGGGTCACCGCTGGATGTGCTCAAAAACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCGTACTATGTGGGCGGTGGATTGATTGCTTCACTTCATGTGATGAAATGGCTTGGGATTGATTCAGAACTTGAACCATCCATGGTTGATGAAGCCATCACTGCTGCATCTCTGCACATATATATGCCAAAAGTAAATGAGATTGCAAGCCTTGAAAAGAAAATTGGATATGAATTTTCTGTCAAGGGACTCTTACTAGAGGCAATCACACATTTGTCTTGGGCAGAACTTGGGATTGGCTTCTGTTATGAGAGACTTGAATTTCTCGGCGACTCGGTGTTGGACGTGCTTATTACATGGTATCTTTATCAAAATCACACAGATATTGATCCAGGAGACTTGACCGACTTGCGATCTGCTTCTGTCAATAATGAAAATTTTGCTCAAGTTGCTGTTAGACGGAACCTTCACCAGCACCTTCTGCATAGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCACTCCCAGGCATTAGAGCTCCCAAGGTTAGATATGGTACACAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAATCTCAATCTCGATGAAGTGTGGAAGGTTTTCAATCCTCTGTTATCCCCCATTGTTACTCCTGATAAACTTGAACTTCCTCCATTGCGTGAACTAAATCAATTATGTGACTCGCTCGGGTATTTTGTAAAAGTAAAAGTAAAAGAAAATTTTGAAAAGAATGGATCCATGGAGCATGTTGAGCTTAGTGTACAGCTGCCAAATGCCCTGCTGGTTCAAGAGGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTAAAGAAACTTGAGGGTAGTAGCATATCCAAGGGAAAAAGAGATAATCCTGACCATATCAGCGATTCATCTCATCTCGAAAGGGATTTTAGTCTTCGCCCCTGTCAAACTGAAGAACATTCCTCAGAGCCAGTAGCGCATAAAAGACCCAAACTGGATGAAACTAACTTAACTGCAAGTACTTCTACTGGTCTTTTGCCTCCCAAAGACTGTTCCAGTGAAGCCACTGATTTTAGTCCTTCCATTCCAGTTATTACATCAATTAATATGAAGAAGGGAGGACCCCGGACCACACTTTATGAACTGTGCAAGAGGCTGCAGTGGCCATTGCCTGCATTTGATTCAACAGAATATAAAGATAGAACTCTATTTGAATCCTGTGAAGGCCTGGAAGGAAGCAAAGGACAAAACTGTTTTGTAGCAAAAATTACCTTGTGCATACCTAATGATGGTGATATAAAATGCCAAGGAGATGCTAGAAGTGACAAGAAGAGCTCATATGACTCTGCTGCAGTTGAAATGCTTTATGAGCTACAAAGACTGGGAAAACTTAAAATTAATGTTCCCCAATAA 5175 0.3905 MGSSDQNNNQDQTQNNSLKRTFDHLYTKPEPDDSPFQESLSPDNIDPRGYQLEVFEVARRRNTIAVLDTGSGKTLIAIMLIKDIGQAIKSSGVKKLIVFLAPTVHLVNQQYKNIKHLTDFQVEEYYGAKGVDTWNGKTWEKEISDNDVLVMTPQILLDALRKAFLSIEMICLLIVDECHRATGNHPYAKVMKEFYHQANEKPKVFGMTASPVGKKGISSTLDCEGQISELENILDAQRYTVEDRTEMDVYIPSAKESCIYYDQARSPALNLKPKIEALWLKCDALLSEFQSNYKDMDNKFKTLHQRMSNELAKILHCLEDLGLLCAYEAVKICHENFSKIEGECEVYRKGYLRCITVIEEVIQIIEESLHLADKMILDAEFDYSKAVDLGYISPKLLELIKLFQTFGESSQVLCLIFVERIITAKVIERFVKKASQISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFILMLERGNLKQRNQLFDIIRSERSMTDAAINKDHESNLRAFTVEKTNAYHVESTGASVTLDSSVTLINKYCEKLPRDKYSCTKPTFEFLPMEGCYQCKLILPPNAAFQTIIGPSGKDVRLARNLVCLEACKKLHQMGALNEHLVPSIEDPSEADHIVKNKDSSSGAGAGINVLLINLLYLFINWDLQMFIYVIQNIQLLVLMHFDFTLLLAFEGTTKRKELHGTTSIRALCGTWDDKLDGAKFHAYKFEFTCNIVSEIFSGFVLLMESKLDDDVGNIELDLYLVSKTVKASVSSCGQVDLDAEQMMKAKCFHELFFNGLFGKLVLRSKSAKGEWEFLLQKDTKSLWSPKNLYLLLPLEKFRDISKGSLQIHWSGINSCASAIEFLRRKFSLVAGDGADKGKITSPCDTSSSHMEYESAHEIHFANCVVNINNLKNMVVLAIHTGKIYCIIEVVSSLSAESPFDGNNEKSGAECITFSNYFNKRYGITLRHPGQPLLRLKQSHNPHNLLNFHEEGEKSSQIGPVNPKMPAHVHMPPELLCLLNVKRDVLKSMYLLPSMMYRIESFMLSSQLREEINGETSNFNISSSLILEALTTLRCCENFSMERLELLGDSILKYAVSCHLFLKYPKKHEGQLTARRQSAVRNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHPVSCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIASLHVMKWLGIDSELEPSMVDEAITAASLHIYMPKVNEIASLEKKIGYEFSVKGLLLEAITHLSWAELGIGFCYERLEFLGDSVLDVLITWYLYQNHTDIDPGDLTDLRSASVNNENFAQVAVRRNLHQHLLHSSGLLLSQISEYVKVISESLPGIRAPKVRYGTQALGDLVESIAGAILIDTNLNLDEVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVKENFEKNGSMEHVELSVQLPNALLVQEGKGPNKKTAKGEAAFHLLKKLEGSSISKGKRDNPDHISDSSHLERDFSLRPCQTEEHSSEPVAHKRPKLDETNLTASTSTGLLPPKDCSSEATDFSPSIPVITSINMKKGGPRTTLYELCKRLQWPLPAFDSTEYKDRTLFESCEGLEGSKGQNCFVAKITLCIPNDGDIKCQGDARSDKKSSYDSAAVEMLYELQRLGKLKINVPQ. 1725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01161 1724 SMART riboneu5 1105 1278 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 SMART riboneu5 1314 1467 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 CDD SF2_C_dicer 391 523 - -
Seca4g01161 1724 SMART ultradead3 43 242 IPR014001 -
Seca4g01161 1724 CDD RIBOc 1315 1465 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 Pfam Helicase conserved C-terminal domain 399 512 IPR001650 -
Seca4g01161 1724 SMART helicmild6 428 515 IPR001650 -
Seca4g01161 1724 Pfam Dicer dimerisation domain 582 666 - -
Seca4g01161 1724 ProSiteProfiles Ribonuclease III family domain profile. 1086 1258 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 FunFam Endoribonuclease dicer-like 1 386 549 - -
Seca4g01161 1724 CDD DEXHc_dicer 47 243 - -
Seca4g01161 1724 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g01161 1724 FunFam Endoribonuclease dicer-like protein 43 280 - -
Seca4g01161 1724 SUPERFAMILY RNase III domain-like 1085 1275 IPR036389 GO:0004525|GO:0006396
Seca4g01161 1724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 530 IPR027417 -
Seca4g01161 1724 FunFam Dicer-like 104 1081 1270 - -
Seca4g01161 1724 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Seca4g01161 1724 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1470 1540 IPR014720 -
Seca4g01161 1724 PANTHER DICER-RELATED 61 1544 - -
Seca4g01161 1724 SUPERFAMILY PAZ domain 948 1060 IPR036085 GO:0005515
Seca4g01161 1724 Gene3D - 1635 1714 - -
Seca4g01161 1724 ProSiteProfiles PAZ domain profile. 951 1061 IPR003100 GO:0005515
Seca4g01161 1724 MobiDBLite consensus disorder prediction 1542 1608 - -
Seca4g01161 1724 Pfam Type III restriction enzyme, res subunit 52 211 IPR006935 GO:0003677|GO:0005524|GO:0016787
Seca4g01161 1724 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g01161 1724 SUPERFAMILY RNase III domain-like 1298 1464 IPR036389 GO:0004525|GO:0006396
Seca4g01161 1724 ProSiteProfiles Ribonuclease III family domain profile. 1299 1444 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 MobiDBLite consensus disorder prediction 1589 1608 - -
Seca4g01161 1724 FunFam Endoribonuclease dicer-like 1 1293 1465 - -
Seca4g01161 1724 MobiDBLite consensus disorder prediction 1542 1588 - -
Seca4g01161 1724 SMART PAZ_2_a_3 926 1085 IPR003100 GO:0005515
Seca4g01161 1724 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Seca4g01161 1724 Gene3D Ribonuclease III domain 1291 1464 IPR036389 GO:0004525|GO:0006396
Seca4g01161 1724 Gene3D Ribonuclease III domain 1087 1269 IPR036389 GO:0004525|GO:0006396
Seca4g01161 1724 Gene3D paz domain 936 1059 - -
Seca4g01161 1724 FunFam Dicer-like 104 940 1058 - -
Seca4g01161 1724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 553 IPR001650 -
Seca4g01161 1724 Pfam Ribonuclease III domain 1123 1257 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 Pfam Ribonuclease III domain 1335 1443 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 229 IPR014001 -
Seca4g01161 1724 Gene3D - 388 551 IPR027417 -
Seca4g01161 1724 Gene3D - 42 277 IPR027417 -
Seca4g01161 1724 FunFam Endoribonuclease dicer-like 1 577 673 - -
Seca4g01161 1724 ProSitePatterns Ribonuclease III family signature. 1335 1343 IPR000999 GO:0004525|GO:0006396
Seca4g01161 1724 Pfam PAZ domain 950 1081 IPR003100 GO:0005515
Seca4g01161 1724 CDD RIBOc 1105 1269 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01161 Seca-Chr4 18548719 18565882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01161 439 512 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 1.00e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01161 K11592 - gmx:100806831 2545
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01161 4 18548719 18565882 Seca4g01161 4 18548719 18565882 ECH
Seca12g00562 12 5022688 5035467 Seca4g01161 4 18548719 18565882 ECH
Seca6g03653 6 103748284 103764681 Seca4g01161 4 18548719 18565882 ECH