Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01160 ATGGGTGGTGATGGTAAAGTTGAAGTTGTGAGTAGCAGGGGGTGCTCGAGGCTGGTTTCTTCTTCACTTTCTTCATCCAGAGGTCTGCAACCATTGGAGCCAATGTCTCCTGTTTCTTCCTCTGTGCAAGTGCGATCAAGTGCTCCCTTTTCTGGTCTTGTTATATGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCAAGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACTCATTTGGTGGTTCAGAGCTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAGTTGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTGGACAGCGTCAGGAAAAATGTAAGGTTGACCGAATCACATTATAGTGTGAAGAGTTATAGAGATAACAATATGCGCATGGATGATTTTAAACTGCTTCCTGGTTATACAAATTCTGAAAATTATTGCCTTCCTACAAGAATTCACGAAACCAAGCATGCTCATAGTGTTGAAGAATTTCAAAGATCCTCTGGGAGAGAGTCTAACAGAAATTTGGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGGAACAAGGTTGTTGAGACTGCCTCAAAAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCCATCCAAAGATATCTTGGATACTCCAGTAACCTTATTACACCACTCTGGATTCTCAAAACAGCTAAGGAGAAATATGCACAAAGGCTTGTTCACATGTCTGTTGATTTGGCAAGGCAAGTTGGCTTGATGATTGAAGACATTCATAATGGAATTTCTGGGAAGGAAATAAAGCAAAAAGTCCACGATGATCTTCAAGGCAGTGAACATGAAGTTAGTTACAAAGAAAGACAACAAATTGTGAATTCTGCAAAAGCTGGTGTCAGAAATCGCCGTGGTCGTCGAATGCAGACATGTCAAACTCCGATACGTCCTATAACACCCAACAACCTTCTGGACTCTATCTGCTGGTCAATATCCGAGCCAACTTCATCTGCTTCCATTTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCATACTTCAATATTTTTTGATGCAAAAGGAGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTACTCTTACTGAAAGTGAGAAATCCGAGTTGATATTTAAAAACCATTTTCTTACCATCCTCTTCCCAATCGACCGATTTAATGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGTACAGTATTTATTCTATTGGAAATTGACAAGCCTTATTGACTTTACCTTATAG 1449 0.4086 MGGDGKVEVVSSRGCSRLVSSSLSSSRGLQPLEPMSPVSSSVQVRSSAPFSGLVICVTGLSKEARNQVKEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKVGLFVVTLGWFVDSVRKNVRLTESHYSVKSYRDNNMRMDDFKLLPGYTNSENYCLPTRIHETKHAHSVEEFQRSSGRESNRNLDSTLSGCSIYVDPGISSELRNKVVETASKEGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKYAQRLVHMSVDLARQVGLMIEDIHNGISGKEIKQKVHDDLQGSEHEVSYKERQQIVNSAKAGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSSASIYTDSFSVEDPSENHTSIFFDAKGDGKDSEASFSNSTRTLTESEKSELIFKNHFLTILFPIDRFNEMGPSSRTFFSHNGFTCLQVLDHIHAFYQVQYLFYWKLTSLIDFTL. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01160 482 ProSiteProfiles BRCT domain profile. 191 269 IPR001357 -
Seca4g01160 482 CDD BRCT_TopBP1_rpt2_like 49 127 - -
Seca4g01160 482 ProSiteProfiles BRCT domain profile. 45 137 IPR001357 -
Seca4g01160 482 Gene3D BRCT domain 48 139 IPR036420 -
Seca4g01160 482 SUPERFAMILY BRCT domain 47 138 IPR036420 -
Seca4g01160 482 Pfam twin BRCT domain 53 110 IPR001357 -
Seca4g01160 482 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 465 - -
Seca4g01160 482 SMART BRCT_7 47 127 IPR001357 -
Seca4g01160 482 SMART BRCT_7 193 269 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01160 Seca-Chr4 18541276 18548033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01160 49 137 Core DNA Replication Machinery Family AT1G77320 39.326 1.42e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01160 - - gmx:100815253 772.311