Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01159 ATGGTTTTTTCAACAGGAAACGTTGGTGGGTCTAGTGATGAAGACACTCAGAACTCACACATGGAAAAAAAATCCTTTCACAGTCGTCTCAGTATCGCACAAACAACTGTACTTGAAAATTTCTTCAAGGAATGCCCAATTCCAGATACAGCTCGACAACGTCAATTGGCTGATGAGGTTGGACTTGAACCCAAACAAATTAAGTTTTGGTTTCAGAACAAGAGGACTCAAACAAAGGTTCAATGCAAGCGAGAAAATAATACTACTCTTCGAGTTGAGAAGGATAGGATGCTTAACGAAAACCTCCAAATGAAAGAGGCAATAGAGAATATAATTTGCCAAGATTGTGGGGGTCCACCGTTACTTGAAGTAGAGCATGAAAGTTTCATGCGACAAATGCAACTTCAAAATACAATGCTAAAAGAAGAGGTTGGTGAATCTGTATAA 447 0.3893 MVFSTGNVGGSSDEDTQNSHMEKKSFHSRLSIAQTTVLENFFKECPIPDTARQRQLADEVGLEPKQIKFWFQNKRTQTKVQCKRENNTTLRVEKDRMLNENLQMKEAIENIICQDCGGPPLLEVEHESFMRQMQLQNTMLKEEVGESV. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01159 148 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Seca4g01159 148 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g01159 148 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 144 IPR042160 -
Seca4g01159 148 MobiDBLite consensus disorder prediction 1 15 - -
Seca4g01159 148 SUPERFAMILY Homeodomain-like 17 85 IPR009057 -
Seca4g01159 148 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Seca4g01159 148 Pfam Homeodomain 30 79 IPR001356 GO:0003677
Seca4g01159 148 CDD homeodomain 28 81 IPR001356 GO:0003677
Seca4g01159 148 Gene3D - 7 88 - -
Seca4g01159 148 SMART HOX_1 23 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01159 Seca-Chr4 18530808 18532486 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01159 7 144 Homeobox Transcription Factor Family AT1G05230 42.754 9.01e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca4g01159 Homeodomain 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01159 K09338 - gmx:100795075 157.918